Gene Amir_2944 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_2944 
Symbol 
ID8327133 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp3400147 
End bp3400857 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content71% 
IMG OID644943470 
ProductPeptidoglycan-binding LysM 
Protein accessionYP_003100711 
Protein GI256377051 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.34706 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCCGCCCA CCTCGGGCGC GAGCCTCGTC AAGGCCCGCC TGGTCATCAT GGAGCCGCCC 
CCGAGGGTCG GCGCGAAACC GGGTGGGAAG CTCGCCACCG TCAAGTTCCA GTTCAACCCC 
AACGCGCTCT CGCTGTCCAA GTCCACCGAG TGGCGCCGCC AGCCCGCCCG CATGGCCGGG 
TCGGCCTCGC TGCCCGAGTT CGTCGGCAGC GGGCCGCGGA CCCTGTCCGT GCAGGTGTTC 
CTGGACGCCA CGGCCAAGCA CGACAACTCG GTGGAGCAGC GCATCGAGAG CCTGATGGTG 
GCGTGCGTGC CCACCAAGAG CAGCATCGCG AAGAAGAAGC CCGCGAGCCC GTGGGTGCGC 
TTCGAGTGGG GCACCGCGAA GTCCGTGTCG TTCGACGGGG TGCTCTCCAG CCTGTCGGTC 
GACTACTCGC TGTTCGACGT CGACGGCACG CCGCTGCGCG CCACCTGCTC GCTGTCGATC 
GAGGAGGCCG GGGTCGACCC GCCCGGCCAG AACCCGACCT CCGGCACCGA GGAGGCCAGC 
CGCACGCACC GCGTCGTCGT CGGGGACACG TTGGCGCAGC TGGCGTTCCG CGAGTACGGC 
GACCCCACGG CCTGGCGCGT CATCGCCGAG GCCAACGACA TCGACGACCC GATGGTCCTG 
GTTCCGGGCA CCGAGCTGCT GGTGCCCCTG GCAGACGGAG GTGGCCGGTG A
 
Protein sequence
MPPTSGASLV KARLVIMEPP PRVGAKPGGK LATVKFQFNP NALSLSKSTE WRRQPARMAG 
SASLPEFVGS GPRTLSVQVF LDATAKHDNS VEQRIESLMV ACVPTKSSIA KKKPASPWVR 
FEWGTAKSVS FDGVLSSLSV DYSLFDVDGT PLRATCSLSI EEAGVDPPGQ NPTSGTEEAS 
RTHRVVVGDT LAQLAFREYG DPTAWRVIAE ANDIDDPMVL VPGTELLVPL ADGGGR