| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2540 |
|---|
| Symbol | |
|---|
| ID | 8326729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 2861875 |
|---|
| End bp | 2865831 |
|---|
| Gene Length | 3957 bp |
|---|
| Protein Length | 1318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | 644943082 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_003100323 |
|---|
| Protein GI | 256376663 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1204] Superfamily II helicase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTGGGGC GGGACACGTC GGTCGCCGGG GTCGTGCAGG CCCGGTGGGG CGTGCGCCCG
GAACCGGCGA TCGCCCGCTA CGCCGAGCCT GGTTGGCAGC TGTCGCCGCT GCCGGTGGAG
AAGTCCTGCC CAGGGTGCGG CGGGGAGCTG CACGGGCTGT ACCGGGCGCA CCCGAGCGGC
GGGAGGCAGC AGCTGCAGGC GGCGGTGGCG TGCCCCGGCT GCCCGGCGAC GTTCACGCTG
CGCGAGCTGA AGCTGGCGCA GCGGGCGGTG GTCGGGGACC TGAAGCCGGA CGCCGTGGCG
CGGCGGATGG CGGAGGACGC GCAGCTGGCG TCGCTGGCGC TGGAGGTGGA CGAGCGGCCT
GCCGAGCCCG AGCGACCGGT CGAGCCGGAG CGGCCGAGGC ACGTGCGCGA GGCCGACGCG
CCCGAGCTGC CGGGGCCGTG GGACGTGGAG CCTGCGAACC CGTGGGCGGA CGAGCCGCCG
CAGCGCGAGC CCGAGCCCGA GCGGCGGCCC GTCGCACCGG CGGAGCCGCG CGGGCTCGTG
CCCCGACGAC CGGTGGAGCA GCCGCCGGAA CCCGAGTACC CCCTGGACCT GGGCTACCCG
GTCGAGCGAC CCGCGCCGCG CGAGGAGACC CCGCCCGCCG CGCCGACGCC CGAGCCGAAG
CTGCGCTACA CCCGCCCGAG CCAGCGCGCG GGAGGCGGGC CGGACGCCCC GGCCGCACGC
CCGCGCACCC GGCGACCGCT GAAGTTCGAG CGCAAGAGCA GGCTCCGACC GGACGACTTC
GCGCGGGCCG AGGGGGAGGC GCCCGCGGAG GGGGACGCGC CCGCCGAACG GCCCGACGCC
AACCCCCACG CGGAACCGGC GCCTGTCGAG CAGGCGCCCG CCGAACCTGC GCGGAGTGAG
CGAACTCGCC CCGAACCAGT CCAGGTCGAG CCCTCGCGGC GTGCGGACGC CGAGGAGGGC
GCGCCCCTCG CGGCCGACAC CGCCGAGCCC TCCGCCCGGA CCACCCCGGC CGAGCCCGCC
CCGGTCGTGC CCACCACCCG GCCCGCGCCC GCCGAGCCGT CCCCGCGCCC CGCCCCCTCC
GGCCCGGTCC TCGGTCCCCA GCCCGCGCCC GCCCGCCGCA CCGCCACCGC CGTCGTCGCC
GCCCGCATCC GCGCGATCCT GGCCACCACC CCGGTCCCCA CCGCCGCCGC CGAGGAGTTC
CCCGCCCTCC CCCACCACCT CCTCGCCGAC GCGGGCGCCG TCCCGGTGTG GTGGTGCAAG
ACCACCGACC CCACCCTCAA GCCCCCACCC GCCCCACCCG GCGCCGACCT GCGGGTCCTC
CTGCCCGCGC ACCCCGACTT CGCCGACCTG CGCACCCTCC TGCGCTCCGA GGGCGTCCCG
TTCCGGGAGC TGCCGCACTG GCTGGAGCAG GAGACCGTCA CCTCCCTGGA CGCCCCGCTG
CGCGCCACCG CGCACCTGTC CGAGGCCGGC GGCGTGGTGG CGGAGGCGTG CGAGCCGGTC
GCCGAGGACG CCGCGCTCGC CGCGCGCCTG GCGTTCCAGG TGGTCTGGGA CCTGCACGAG
CCGCCCGGTC CGACGCCGCC GCCCGCGCCG ACCGCCGACC TGGTGCCCGA GCACTGGCTG
CCCTACCTGC CGTTCCCGGT GCTGAACCCG GCCCAGGCCC AGGCCGCGCC CGCGATCGTC
GACACCGACG AGCACCTGCT GGTCACCGCG CCCACCGGCG CGGGCAAGAC CACCATCGGG
ATGCTCGCGG TCCTGAAAGC GATCCTGGAC GAGGGCCGCA AGGCCGCCTG GCTGGTGCCG
CAGCGCTCCC TCACCGACGA GCTGGACCGC GAGCTGCGGG CGTGGCGCGG GCAGGGCCTG
CGGGTGGAGC GGCTGTCCGG CGAGCACGCG GTGGACGTGG AGCGGGTGCG CGCGGCGGAC
CTGTGGGTGG CCACGACGGA GAAGTTCGAG GCGGTGTGCC GGGCCGCGTC GTTGCAGGCC
GCGCTGGGCG AGGTGGGCTG CCTGGTGGTG GACGAGATCC ACCTGCTCGG CAGCCCCGGC
CGGGGCGCGC TGCTGGAGGC GCTGCTGGCC AGGGTGCGCG GCGCGGACTC GCCGGTGCGG
ATCGTCGGGC TGTCCGCGAC GGTCACCAAC GCCGCCGAGG TCGCCGAGTG GTTGCAGGCC
CGCATGGTGG CGACCGCGTG GCGGCCGTCG AAGGTGACCT GGCAGCTGCC GACGGTGCCC
GCGACGTCCG GGTTCGCGGC GGCCTCGCGG GTGCGCGAGC AGGTCGCGGT GGACCTGGTC
GGGCGGCACA CCGCCGACGG GGGCAGCGTG CTGGTGTTCT GCGGCTCCAA GCGGAACGTG
CTGTCCACGG CCATGGCGGT CGCCGCCGAG CGCGGGGCCG AGCTGCCCGC CCCGGACGAC
CTGGACGCGC TGGAGGCGGC GTGCGCGGCG GTCGGGGTGC GGATGCACTA CTCGGACTAC
GAGCACAAGC ACGCGGCCGA GCGGGCGTTC CGGGCGCGCG AGTCGGACGT GCTGGTGGCG
ACGTCGACGG TGGCGGCCGG GGTGAACCTG CCCGCCCGCG CGGTCGTGGT GCGGGACAGC
TCGATCGGCG GCGAGCCGAT GGACACGTCC ACGGTGCTCC AGATGTTCGG GCGGGCCGGG
CGGATCGGGG CCGGGGAGAC CGAGGGCTGG TCGTACCTGG TGGTGGACGA GTCGCAGCGC
GCGGCGTGGC AGGCGCGGCT GGTGGCCGGG TACTCGGTGT ACTCGCGCAT CCGGGAGAGC
CTGGCCGACC ACGTGCTCGC CGAGGTGCTC CAGGGGCGGG TGACCACGGA GGCGGACGCG
CGGGCCTGGT GGGTGCAGAC GCTCGCGCAC GCGCAGGGCG ACGACGACGA GTCGGTCGTG
GTGGAGGCGG TGGGGTTCCT GGTGGAGCAG GGCTACCTGA CCCGCTCCGG GGACGCGCTG
GCCACGACCG AGCTGGGCCG GTTGACCGCG CGGATGATGG TGCCCACGAG CACCGGGCAG
CGGCTGCGGT CGGCGCTGGC GCTGCTGCCG GTGCCCGCGG ACGCGGACGA CGCCGAGGAC
GCGCTGTCCC TGGTGCTGTC GGTGGCGGTG CCGGAGCTGG CCGGGGTGGC GGTGCCGGAG
CGGGTGCGGC CCGCGGTGGC GACGGCGGTG AAGGCGCGCG GGGTGACCTC GCGGATCACC
GGGGCCACGT CGGTGCGCGG CCTCGGCTCG TCGGCGACGA CCGCGCCCGG TGACCTGGCG
TGGGCGGCGC TGCTGCTGGT GGCGCGCTCG CCGAGGGCGT TCGCGGGGGC GCGGCGGGCG
GTGGCGGGGA TTCCGCTGTC GACGCTGCAC CAGGTGCTGG AGCAGGCCCC GCGCTACCTG
TCGTGGCTGG CCGCGCAGGG CGTGCACGGG ACGGTGCACC CGTGGATCGC GGTGGTGGCG
GCGGACCTGG ACCAGCGGGT GCGCTGGCGG GCGCTGGGGC CGGGGCGCGG CGCGGGGCGG
CTGCTGTGGC TGTGCGAGCG GATGGCGACC AGGCAGCGGG CGCGCGAGCT GGTGCCGGGG
CTGTGGCGGT CGGCGACGGC GAGCGGGCTG CGCTCCCCGG ACTGGCGGGC GGGCCGCCCG
CCCGCCGGGT GCGAGCTGGA CCGGGTCGGG TACACGGCGC TGCTGCGCGA GCGGGTCACC
GGCGCGGAGC TGACGGCCGG GCCGGAGGCG GCGCGGGTGG TGTGCACGGC GGGCGCGACG
GCGATCACCT GGCGCGGCAA GGAGACCGGC CCGCCGACCC CGACCGGGGG CGCGCGCGAG
CTGCCCTACC CGGAACCGCC CGCGACCGGC GAGACCCCGG TGGGGGCGGC GGTGTTCACC
CGGCGCGGGG ACTACCGGGC AACGGGGTGG CTGGCGGCGT ACGACGCGCT GGCGGGCCCG
GAGGAGGAAC CCGCGCGGGA GCAGGCGCCC CGGCGGCGGG GGTTGGGCAT GGTGTGA
|
|---|
| Protein sequence | MVGRDTSVAG VVQARWGVRP EPAIARYAEP GWQLSPLPVE KSCPGCGGEL HGLYRAHPSG
GRQQLQAAVA CPGCPATFTL RELKLAQRAV VGDLKPDAVA RRMAEDAQLA SLALEVDERP
AEPERPVEPE RPRHVREADA PELPGPWDVE PANPWADEPP QREPEPERRP VAPAEPRGLV
PRRPVEQPPE PEYPLDLGYP VERPAPREET PPAAPTPEPK LRYTRPSQRA GGGPDAPAAR
PRTRRPLKFE RKSRLRPDDF ARAEGEAPAE GDAPAERPDA NPHAEPAPVE QAPAEPARSE
RTRPEPVQVE PSRRADAEEG APLAADTAEP SARTTPAEPA PVVPTTRPAP AEPSPRPAPS
GPVLGPQPAP ARRTATAVVA ARIRAILATT PVPTAAAEEF PALPHHLLAD AGAVPVWWCK
TTDPTLKPPP APPGADLRVL LPAHPDFADL RTLLRSEGVP FRELPHWLEQ ETVTSLDAPL
RATAHLSEAG GVVAEACEPV AEDAALAARL AFQVVWDLHE PPGPTPPPAP TADLVPEHWL
PYLPFPVLNP AQAQAAPAIV DTDEHLLVTA PTGAGKTTIG MLAVLKAILD EGRKAAWLVP
QRSLTDELDR ELRAWRGQGL RVERLSGEHA VDVERVRAAD LWVATTEKFE AVCRAASLQA
ALGEVGCLVV DEIHLLGSPG RGALLEALLA RVRGADSPVR IVGLSATVTN AAEVAEWLQA
RMVATAWRPS KVTWQLPTVP ATSGFAAASR VREQVAVDLV GRHTADGGSV LVFCGSKRNV
LSTAMAVAAE RGAELPAPDD LDALEAACAA VGVRMHYSDY EHKHAAERAF RARESDVLVA
TSTVAAGVNL PARAVVVRDS SIGGEPMDTS TVLQMFGRAG RIGAGETEGW SYLVVDESQR
AAWQARLVAG YSVYSRIRES LADHVLAEVL QGRVTTEADA RAWWVQTLAH AQGDDDESVV
VEAVGFLVEQ GYLTRSGDAL ATTELGRLTA RMMVPTSTGQ RLRSALALLP VPADADDAED
ALSLVLSVAV PELAGVAVPE RVRPAVATAV KARGVTSRIT GATSVRGLGS SATTAPGDLA
WAALLLVARS PRAFAGARRA VAGIPLSTLH QVLEQAPRYL SWLAAQGVHG TVHPWIAVVA
ADLDQRVRWR ALGPGRGAGR LLWLCERMAT RQRARELVPG LWRSATASGL RSPDWRAGRP
PAGCELDRVG YTALLRERVT GAELTAGPEA ARVVCTAGAT AITWRGKETG PPTPTGGARE
LPYPEPPATG ETPVGAAVFT RRGDYRATGW LAAYDALAGP EEEPAREQAP RRRGLGMV
|
|---|
| |