| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2312 |
|---|
| Symbol | |
|---|
| ID | 8326501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 2568801 |
|---|
| End bp | 2570450 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644942857 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_003100098 |
|---|
| Protein GI | 256376438 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.367472 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCACG CCTCGGCGGC GCTCACCCCG GTGCTGCGCG ACCTGTTCGG CGTGGCGGCC
GACCTGGCCA CCCACAGCAC GGGCGCGTCC GAGGCGCGGG CGCGGGTCGT GGAGCTGTGC
GGGCTGCTGC CCGACGGGAA CAACGTGCTC AAGCAGGCGC TGGGCCTGCT CGACGCCCTG
CGCGTCGAGC AGGCCCGCGA GCCCAGGCAC GCGGCGGGCG CGCCGGCCCC GGAGCGCTCG
CTCGTGGTGC TGGTGGACGC GCACGGCGCG ACGGACTTCG ACCCGGACGC GGTGCGCGAC
CTGCTGGGCA TGGTCGAGGG GCCGCCGACG ATGGAGCGGT TCACCGCGCT GGTGCACCCG
GACGACCTGC CGCGCGCGCG GGGCGAGTAC CGCAGGCTGC TGACCTCGCC GCACCGGCAG
GTCGAGCTGG ACCTGCGGGT GCGGCACGCG GCGGGCCACT GGGTGGTGCT GGCGGTGGGG
ATGCTGAACC TGCTCGACAC CGGGGCGGGC GTGGTGGTGG CGCACTGCCG GGACGTGACC
GCGCGGCGGG TCGCCGAGGA GGAGGCGCGG GCCGAGCGCG GGCGGTTGCA GCAGGTGGTG
CTGCGGCTGG CGGGCGCGGT GGCGGTGGAC GACCGGGAGC GGGTGTTCCT GCACAACCCG
GCGTTCACGG CGGTGTTCGG CGACCGGCCG TGGAACGGGA TGCCGGTGGC GGACTTCACG
GCGGCGCTGG GCGCGGTGAG CGCGGAGCCG GTGGCGACGG CGGCGCGGCT CGCGGAGCTG
GCGTCGTCCG AGTGGGGGCA CCGGGACGTG CGGCTGGTGC TGCGCGACGG GCGGATCGTG
GTGGGCGACC TGGTGCCGCT GGGGCCCGCT GCGGAGCTGG GGCGGTTCTG GCACTTCCGG
GACGTCACGG CGGACACCGC GGCGCGGGTG GAGCTGGAGG AGAGCAACCG GGTGCTGGCC
GAGGCGGCGG CGGTGAAGGG CCGGTTCGTG GCGACGGTGT CGCACGAGCT GCGCACGCCG
CTGACCGCCG TGCTGGCGTT CGCGGAGATG ATGCCGGGCG CGGGGCCGCT GAACGCGGAG
CACCTGGCGC ACCTGGAGGT GATCCGCCGG AACACGGCGC GGTTGGTGCG GCTGGTGGAC
GACCTGTTGT TGTTGTCCCG GTTGGAGAGC CACCGGTTGC CGCTGTCGCT GGCGGAGGTG
GACGTGGCGG GGCTGCTCGC GGAGGCGGAG CACGACCACG CGAACCCGGC GGAGAGCGCG
GGGATCGAGC TGGTGGTGGA GCCGGTGGAC GGGCCGAAGG TGCGCGGGGA CGCGGTGCGG
CTGTCGCAGG TGCTGGACAA CGTGATCGGC AACGCGCTGA AGTTCACCCC GGCCGGGGGA
CGCGTGCGGG TGCGGTCCCA AGTGGACCCG ACCGGGTGGT TGATCACGGT GAGCGACACC
GGGATCGGCA TCCCGGCGGC GGACCTGCCG GACCTGTTCG ACGTGTTCCG GCGGGCGGGC
AACTCGACGG GCGTTCCGGG GAGCGGGCTG GGGCTGTCGA TCTGCCGCCA GATCATGGCG
CTGCACGGCG GGAACATCCG GGTGCGGGCC GCCGAGGGCA GGGGGACGAC GGTGGAGCTG
ACGCTCCCGA TCGGAGGTTC GCCCGGATGA
|
|---|
| Protein sequence | MDHASAALTP VLRDLFGVAA DLATHSTGAS EARARVVELC GLLPDGNNVL KQALGLLDAL
RVEQAREPRH AAGAPAPERS LVVLVDAHGA TDFDPDAVRD LLGMVEGPPT MERFTALVHP
DDLPRARGEY RRLLTSPHRQ VELDLRVRHA AGHWVVLAVG MLNLLDTGAG VVVAHCRDVT
ARRVAEEEAR AERGRLQQVV LRLAGAVAVD DRERVFLHNP AFTAVFGDRP WNGMPVADFT
AALGAVSAEP VATAARLAEL ASSEWGHRDV RLVLRDGRIV VGDLVPLGPA AELGRFWHFR
DVTADTAARV ELEESNRVLA EAAAVKGRFV ATVSHELRTP LTAVLAFAEM MPGAGPLNAE
HLAHLEVIRR NTARLVRLVD DLLLLSRLES HRLPLSLAEV DVAGLLAEAE HDHANPAESA
GIELVVEPVD GPKVRGDAVR LSQVLDNVIG NALKFTPAGG RVRVRSQVDP TGWLITVSDT
GIGIPAADLP DLFDVFRRAG NSTGVPGSGL GLSICRQIMA LHGGNIRVRA AEGRGTTVEL
TLPIGGSPG
|
|---|
| |