Gene Amir_2048 details

Gene Information

• Locus tag: Amir_2048
• ID: 8326237
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: -
• Start bp: 2271015
• End bp: 2273054
• Gene Length: 2040 bp
• Protein Length: 679 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644942599
• Product: cellulose-binding family II
• Protein accession: YP_003099840
• Protein GI: 256376180
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3534] Alpha-L-arabinofuranosidase

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCGCTC CCCGCACCGC TTTGTTGGCA CTCGCCCTGA TCGCCGCACC GCTCGCCACC 
CCCGCGGCGG CGTCCCCGAG CGCCGATCCC CCGACGTCCC AGGCCGTCGA CACCCGCGTC 
TCGGTGAACA CCCGCGCGGG CCTGGAAACC GCCCCCGAGC TGGGAATGGG CGTCAACCAC 
GCCATCTGGG ACTCCCAGCT CGGCACCCCG CAGGTCGCCG ACCTGCTCAA GGACGCAGGC 
GTCCGCGCCA TGCGCTACCC CGGCGGCTCG TACTCGGACA TCTACCACTG GCGCGACCAC 
ACCGCCCCCG GCGGCTACGT GGCCCCGAAC ACCGACTTCG ACACGTTCAT GGCAGGCGTG 
CGGCGGGCGG GCGGTCAGCC GATCGTCACC GCCAACTACG GCACCGGGAC GCCGCAGGAG 
GCCGCCGACT GGGTGCGCAG CGCCAACGTC GACAAGGGCT ACGGCGTCAA GTACTGGGAG 
ATCGGCAACG AGCTCTACGG CAACGGCCAC TACGGCACCG CGTGGGAGGA GGACCACCAC 
GAGGACAAGA GCCCGGCCGG GTACGCGGGC CTGGTGCGCG ACTACTCGCG GGCGATGAAG 
GCCGTCGACC CGAGCATCAA GATCGGTGCG GTGCTGACCA CGCCCGGCGA GTGGCCGGAC 
GCCATCACCG CGGCCGGTGA CGCGGGCTCG TGGAACCAGG TCGTGCTGTC CACGGCGGGC 
GCGGACATCG ACTTCGTGGT CCTGCACTGG TACCCGCGCG GCACGAACGC CCCGGACCTG 
CTGAGCAGCG CGGACACCAT CCCCGAGATG ATGGCCATGG CCAAGGAGCA GATCCGCAGG 
CACACCGGGC GGGACCTCGG CATCGCGTTC ACCGAGCTGA ACACGAACTT CGCCCGCAAC 
ACCCAGCCGA CCGCGCTGTT CGCCGCCGAC GCCTACGCGT CGCTGCTGGA GCGCGGCGCG 
TTCACCGTCG ACTGGTGGAA CGTGCACAAC GGCCTGGGCA AGGTCACGAC GGTCGCCGGT 
CAGACCGACT ACGACGACTT CGGCCTGCTC TCCAGCGCCA ACTGCACCGA GGACGGCTCG 
GTGTGCCAGC CCGCGCTGAA CACGCCGTTC GCGCCGTACC ACGCGCTCGC GCTGACCTCC 
CGGTTCGCGC GCCCCGGCGA CCAGTTCGTG GCCGCCTCCA GCACCGACCC GCTGGTGCGC 
GCGCACGCCG CCCGACGTCC GGACGGCGGG CTGTCGGTGC TGCTGGTGAA CCGGGACCCG 
GACGCGGCGA GGTCGGTCGC GCTGGACTAC GCCGGGTTCA CCCCGAAGTC CTCGGCGGTG 
GTGCGGACCT ACGGCAACGG CGACACCGCG ATCACCACGT CCACCGGGAC GTCCGGCGCG 
GTCACGCTCG CCCCGTACTC GATCACCGCG CTGGAGCTGG CGCCCACGTC CGCGACCACC 
GGCCCGGCGA CCCCCGCCCG GCCGACCGCG TCCTCGGTCA CCGACCGCGG CGCCGTGATC 
ACCCTGCCCA CTGCCTCTCC CGGTCTGAAG TACGAGGTGC ACCGCCAGGT CGGCACGCGC 
ACCGACCAGT GGGGCGAGAC CACCGGCGGC AGCTTCACCG CCACGAACCT GTCCCCCAGC 
ACCGAGTACA CCGTCAACGT CATCGCGCGC GACAACGCGG GCCGGGTGTC GTGGGCTTCG 
CCGCCGCTGG TGTTCCGCAC CACCGCGCCC GCCTCGTCCA CCTGCGCGGT GCGGCTGGCC 
AACACCAACG ACTGGGGCAA CGGCTGGGTC GGCGACGTGC AGGTCACCAA CACCGGGACC 
ACCCCGGTGG ACGGCTGGGT GCTGGCGTTC GACTGGCCGA GCACCTGGCA GAAGGTCGAC 
AGCGGCTGGA GCGGCACGTG GGCGCAGTCC GGCCGGTCGG TGACGGTGAC CGCCGACGCG 
GGCAACCGGC TGCTGGCCCC CGGCGCGACG GTCTCGACCG GTTTCGTGGG CTCCTACCAG 
GGCCCGAACC GGCTGCCGAC CGCGTTCTCG CTGAACGGCG TGCCGTGCTC GCTGCGGTGA 

 

Protein sequence

MRAPRTALLA LALIAAPLAT PAAASPSADP PTSQAVDTRV SVNTRAGLET APELGMGVNH 
AIWDSQLGTP QVADLLKDAG VRAMRYPGGS YSDIYHWRDH TAPGGYVAPN TDFDTFMAGV 
RRAGGQPIVT ANYGTGTPQE AADWVRSANV DKGYGVKYWE IGNELYGNGH YGTAWEEDHH 
EDKSPAGYAG LVRDYSRAMK AVDPSIKIGA VLTTPGEWPD AITAAGDAGS WNQVVLSTAG 
ADIDFVVLHW YPRGTNAPDL LSSADTIPEM MAMAKEQIRR HTGRDLGIAF TELNTNFARN 
TQPTALFAAD AYASLLERGA FTVDWWNVHN GLGKVTTVAG QTDYDDFGLL SSANCTEDGS 
VCQPALNTPF APYHALALTS RFARPGDQFV AASSTDPLVR AHAARRPDGG LSVLLVNRDP 
DAARSVALDY AGFTPKSSAV VRTYGNGDTA ITTSTGTSGA VTLAPYSITA LELAPTSATT 
GPATPARPTA SSVTDRGAVI TLPTASPGLK YEVHRQVGTR TDQWGETTGG SFTATNLSPS 
TEYTVNVIAR DNAGRVSWAS PPLVFRTTAP ASSTCAVRLA NTNDWGNGWV GDVQVTNTGT 
TPVDGWVLAF DWPSTWQKVD SGWSGTWAQS GRSVTVTADA GNRLLAPGAT VSTGFVGSYQ 
GPNRLPTAFS LNGVPCSLR