| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1946 |
|---|
| Symbol | |
|---|
| ID | 8326131 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 2155252 |
|---|
| End bp | 2156100 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644942495 |
|---|
| Product | spermidine synthase-like protein |
|---|
| Protein accession | YP_003099740 |
|---|
| Protein GI | 256376080 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.821047 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAACAGC GTGGGGGCGT GGAGCGGCAG GTCCGGTTCG GGACGGCGCA GCTCGCGCCC
GCGCCCTACC GGGAGCGCGG GTGGCTGCTC ATGGTCGACG GGGTGCTCCA GTCCTGCGTG
GACCTGGACG ACCCCGGTTA CCTGCACCTG CCGTACACCC GCTGGGTGGC GCGCGTGCTC
GACCTGCACT GGCCCGAGGG CGACCCGGTG TCCGCGCTCC AGGTCGGCGG CGGCGGGTTC
ACGATCTCCC GCTACCTCGC GCACGCCCGG CCCGGTTCCG CGCAGGAGGT CTACGAGCTG
GACGGGCCGC TGGTCGAGCT GGTCCGGGAG CACCTCGCGC TCGACGCCGT CCCAGGGCTG
AGGGTGCGGG TGGCGGACGG CGAGGCCGGG ATCAGGGGCG CGGCGGACGG CAGCGCCGAC
GTCGTGGTCA TGGACGTCGC GCGGGTCGGC ACGATCGCGC TGAACCTGGC CGTCACGCCG
TTCCTGCGCG AGATCGCCAG GACGCTGCGG CCCGGCGGGC TGTACCTGGG CAACATGTGG
TCGGCGCCCG ACCTGGGGCT CGCGCTGCGG GCCGTCGCGT CGCTGCGCGA GGTGTTCCCG
CACGTGGCGC TGCTCGCCGA ACCGGGGCTG CTGCTGGGGA AGAAGGCGGG CAACGCCGTC
CTCGCCGCCT CCGACCGCGA GCTCCCGCAC GCGGGCATCG CCGAGTGGGC GGAAGCCGGG
GGGAACAAGG TGTTCTGCCT GTCGGCGGAG AAGCTGGCCC GGTTCAAGGG GACCGCGCAG
CCGCTCGACG CGGACATCCC CGAGGACAGC ATCACCCCGG TGCCGCGCTG GCGGACCGGG
GTGAGCTGA
|
|---|
| Protein sequence | MEQRGGVERQ VRFGTAQLAP APYRERGWLL MVDGVLQSCV DLDDPGYLHL PYTRWVARVL
DLHWPEGDPV SALQVGGGGF TISRYLAHAR PGSAQEVYEL DGPLVELVRE HLALDAVPGL
RVRVADGEAG IRGAADGSAD VVVMDVARVG TIALNLAVTP FLREIARTLR PGGLYLGNMW
SAPDLGLALR AVASLREVFP HVALLAEPGL LLGKKAGNAV LAASDRELPH AGIAEWAEAG
GNKVFCLSAE KLARFKGTAQ PLDADIPEDS ITPVPRWRTG VS
|
|---|
| |