| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1695 |
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| Symbol | |
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| ID | 8325880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 1851179 |
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| End bp | 1853077 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644942245 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_003099490 |
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| Protein GI | 256375830 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCACCTC CGGCCGGGCA AATCCGCCCC GCGAAGTACT TGGGCGCGTT TGTCCTCATC
GTGGCCGTGC TGTACGCCTT GGTGTTTTTC ACCGGCAACG GCTCGGCGAT CCCCAAGCTC
GGCATCGACC TCCAGGGCGG CACCCGCGTC ACGCTGACCG CGCGAGCGCC CGACGGCAAG
ACGCCGACGG ACGAGGCGCT CAACCAGGCC AGGACGCTGA TCGAGACCCG CGTCAACGGC
CTCGGCGTCT CCGGGGCGGA GGTGGTCCGG GACGGCAGCA ACCTGGTCAT CACGGTTCCC
GGCTCCGACA GCGAGGGCGC GAAGAGCCTC GGCCAGACGG CCAAGCTGAA CTTCCGCAAG
GTCATCGGGG CGCCGCTGGC GAACCAGCAG GCGCCGAGCA CCGAGACCCC GCCGTCGACC
AGCGGCTCCC CGGCGCCCAC CAGCGGCAGC CAGGCGCCCA CGTCCGGCGC GGGCGCCCCG
CCGTCCGAGG GCGCCTCCGC GCCGTCGACC ACCGGCCAGG GCCGCCCGGC TCCCGCGTAC
CAGCAGCAGC CCTCCGGCGA CGCGGCCCAG CCCTCGCAGA GCGGCCAGCC GCAGCAGTCC
GGCGCGCCGG AGTCCGGTGC ACCCCAGTCC GGGGCCCCGC AGTCCGACGC CCCGAACCCG
GCGACCGACC CCTCGCAGGT CGACTGCCAG GCCGTGTTCC TCGGCAACTA CTCCGAGGAC
ACCACCAAGG CGATCACCGA GGCGCGCACC TGCCGCCAGG ACCCCGCGCT CACCACGCTG
GACGCCTCGA CCGTGCAGCA GGCGCTCGCC GCCTTCACCT GCCCGACCAA CGACCCGCTG
CTGGGCAACG ACGACCCGGC CCAGCCGCTG CTGACCTGCG ACCAGGACAT GGTCACCAAG
TACGTCCTCG GCCCGGTCAC CCCGCCCGCC GACGGCAGCG TCCCGGACAG CGACTACTCC
ATGTACTCCC GGCTCACCGG TGAGGACATC GACAACGCGG TCTCCGGCAC CGACCCGCAG
GGCGCCGGCT TCGTGGTCAG CCTGACCTTC AAGGGCTCGG GCGGCGACAA GTGGGGCAAG
TTCACCTCCG CCAACGTGAA CCAGCAGGTC GCGGTGGTCC TGGACAGCCA GGTGGTGTCC
GCCCCGAACA TCAACGAGCC CATCCTCGGC GGCTCGACCC AGATCAGCGG CCAGTTCGGC
CAGCGCGAGG CCGACAACCT GGCCAACGTG CTCAAGTACG GCTCGCTGCC GCTGTCGTTC
GAGGCCTCCG AGGCCGAGAC CGTGTCGGCC ACCCTGGGCC TGGCCTCGCT GGAGGCCGGT
CTGATCGCCG GCGCCGTGGG CCTGTTCCTG GTGTTCCTGT ACTGCGTCTT CTACTACCGC
CTGCTCGGCC TGCTGACGAT CCTGTCGCTG GTCCTGTCCG GCGTCATCGT CTACGCGGTC
ATGGTGCTCC TCGGGCGCGT CGTCGGCTTC ACCCTCGACC TCGCGGGCAT CGCCGGCCTG
ATCATCGCGA TCGGCATCAC CGCCGACTCG TTCGTGGTGT TCTTCGAGCG CCTCAAGGAC
GAGATGCGCG AGGGCCGCTC CTTCCGCTCG GCCGTCCCGC GCGCCTGGGT CCGCTCGCGC
CGCACGATCC TGTCCGCCGA CGCGGTCAGC TTCCTGTGCG CGATGATCCT GTACGTCATC
GCGGTCGGCC AGGTGAAGGG CTTCGCGTTC ACCCTCGGCG TGTCCACGGT GCTCGACCTG
ATCGTGGTCT TCCTGGTGAC GCACCCGCTG GTCGCGATCA TCTCGAAGTC CAAGACGAAG
TTCCTGAACA ACCCCAAGGT CATCGGGCTC GGCGACGTCG CGCACGCGGC GCACCTCAAG
GCCCCCAAGA GCACCGGCAC CGCCGTGAAG GAGGCCTGA
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| Protein sequence | MAPPAGQIRP AKYLGAFVLI VAVLYALVFF TGNGSAIPKL GIDLQGGTRV TLTARAPDGK
TPTDEALNQA RTLIETRVNG LGVSGAEVVR DGSNLVITVP GSDSEGAKSL GQTAKLNFRK
VIGAPLANQQ APSTETPPST SGSPAPTSGS QAPTSGAGAP PSEGASAPST TGQGRPAPAY
QQQPSGDAAQ PSQSGQPQQS GAPESGAPQS GAPQSDAPNP ATDPSQVDCQ AVFLGNYSED
TTKAITEART CRQDPALTTL DASTVQQALA AFTCPTNDPL LGNDDPAQPL LTCDQDMVTK
YVLGPVTPPA DGSVPDSDYS MYSRLTGEDI DNAVSGTDPQ GAGFVVSLTF KGSGGDKWGK
FTSANVNQQV AVVLDSQVVS APNINEPILG GSTQISGQFG QREADNLANV LKYGSLPLSF
EASEAETVSA TLGLASLEAG LIAGAVGLFL VFLYCVFYYR LLGLLTILSL VLSGVIVYAV
MVLLGRVVGF TLDLAGIAGL IIAIGITADS FVVFFERLKD EMREGRSFRS AVPRAWVRSR
RTILSADAVS FLCAMILYVI AVGQVKGFAF TLGVSTVLDL IVVFLVTHPL VAIISKSKTK
FLNNPKVIGL GDVAHAAHLK APKSTGTAVK EA
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