| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1220 |
|---|
| Symbol | |
|---|
| ID | 8325397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 1363011 |
|---|
| End bp | 1364543 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644941765 |
|---|
| Product | Carbohydrate-binding CenC domain protein |
|---|
| Protein accession | YP_003099018 |
|---|
| Protein GI | 256375358 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3469] Chitinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGGAA AGACCGCGAG GGCGCTGGGC GCCCTGACCG CGGCAGCGCT GACGATCACC
GGGGCGATCC TGCTCGCCTC GGGGAGCGCG TCGGCCGCGA ACCTCGTCTC CAACTCCGGG
TTCGACACCG GATCGACCAG CGGCTGGACC TGCTCCGGCA AGTCCTCCGC CGTGACCTCG
CCCAAGCGCA GCGGCTCGCA CGCGCTGTCC GCGACCCCCG AGGGCTCGGA CAACGCCCGC
TGCTCCCAGA CCGTCCAGGT CCGCCCGAAC ACCGCCTACT CCCTGTCGGC GTGGGTCCAG
GGCAGCTACG TCTACCTGGG CGTGAGCGGC ACCGGCGGCG ACGACAAGAA CACCTGGACG
CCCGGCTCGA CCGGGTTCTC CGAGCTCAAG CTGGGCTTCA CCACCGGCGC GGGCGCCACG
AGCGTGACCG TCTACCTGCA CGGCTGGTAC GGCCAGCCGA CCTACTACGC CGACGACGTG
GTCCTGGACG GCCCCGGTGG CACCCAGCCC ACCACGACCA CGCCGCCCAC CACCACGACG
AAGCCGACCA CGACCACCAC CAAGCCCACC ACCACGACGC CCCCGACCAC CACGCCCCCG
ACCACGACGA CGTCGAACAA CCCCGGCCAG CCCGACCCGG CGCTGCCCAA GCACCTGCTC
ACCGGGTACT GGCACAACTT CGACAACGGC TCGAAGGCGC TCAAGCTCGC CGACGTGCCG
CGCGCCTACG ACATCGTCGC GGTCTCGTTC GCGGACGCCG TCCCGACCAG GCCCGGCGCC
GTCTCGTTCA CCCTCGACCC CGGCCTCGCG GGCAAGCTCG GCGGCTACAC CGACGCCCAG
TTCAAGGCGG ACGTGAAGAC CCTCAAGTCG CGCGGCCAGA AGGTCATCAT CTCGGTCGGC
GGCGAGCGCG GCACCATCTC CGTCGGCGAC TCCACCGCCT CCGCGAACTT CGCGAACAGC
GTCAAGGACC TGGTGGCCTC CTACGGGTTC GACGGCGTGG ACGTCGACCT GGAGAACGGC
GTCAACGCCA CCCACATGGC CCCGGCGCTG CGCGCGATCC ACGCGGCCGG CGGCAAGATC
ATCACGATGG CCCCGCAGAC CATCGACATG CAGTCCACCG GGACCGAGTA CTTCAAGCTG
GCGCTCGCGG TGAAGGACAT CCTCACCGTC GTCAACATGC AGTTCTACAA CTCCGGCGCG
ATGCTCGGCT GCGACCAGAA GGTCTACTCC CAGGGCAGCG TGGACTTCCT CGTGTCGCTG
GCCTGCGTGC AGCTGGAGAA CGGGCTGCGG CCCGACCAGG TCGGCCTCGG CCTGCCGTCC
TCCGGCTCGG CCGCGGGCGG CGGCTACCAG TCGCCCGCCA ACGTCAACGC CGCGCTGGAC
TGCCTGGCCA GGGGCACGGG CTGCGGGAGC TTCAAGCCCG CGAAGACCTG GCCCGGCATC
CGGGGCGCCA TGACGTGGTC GATCAACTGG GACGCCACCG CGAACTGGCA GTTCTCGAAC
ACCGTGGCCC CGCACCTCAA GACCCTGCCG TAA
|
|---|
| Protein sequence | MAGKTARALG ALTAAALTIT GAILLASGSA SAANLVSNSG FDTGSTSGWT CSGKSSAVTS
PKRSGSHALS ATPEGSDNAR CSQTVQVRPN TAYSLSAWVQ GSYVYLGVSG TGGDDKNTWT
PGSTGFSELK LGFTTGAGAT SVTVYLHGWY GQPTYYADDV VLDGPGGTQP TTTTPPTTTT
KPTTTTTKPT TTTPPTTTPP TTTTSNNPGQ PDPALPKHLL TGYWHNFDNG SKALKLADVP
RAYDIVAVSF ADAVPTRPGA VSFTLDPGLA GKLGGYTDAQ FKADVKTLKS RGQKVIISVG
GERGTISVGD STASANFANS VKDLVASYGF DGVDVDLENG VNATHMAPAL RAIHAAGGKI
ITMAPQTIDM QSTGTEYFKL ALAVKDILTV VNMQFYNSGA MLGCDQKVYS QGSVDFLVSL
ACVQLENGLR PDQVGLGLPS SGSAAGGGYQ SPANVNAALD CLARGTGCGS FKPAKTWPGI
RGAMTWSINW DATANWQFSN TVAPHLKTLP
|
|---|
| |