| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_1063 |
|---|
| Symbol | |
|---|
| ID | 8325237 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 1181005 |
|---|
| End bp | 1182555 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644941609 |
|---|
| Product | membrane-flanked domain protein |
|---|
| Protein accession | YP_003098865 |
|---|
| Protein GI | 256375205 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3428] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCAAA CCCCTGCGCC CCAAGCCCTT GCGCCGCAAG CCGACCACCC CCTCCCCGCC
TACCCCACCG CCCCCGAGCT GAACGACGAG CTCGTCGTCG ACTGGCACCG GCTGGACGCG
CGCATGGTCG TGGTCCGCCC GCTCAACGAG ATCATCGGCC TGGTCCCGGT GCTGATCGGC
CTGCTGGTGC TGGGCAACGG CGACGGCTGG CGGGTCGGCG TGAGCATCGC CGTCGTGGTC
CTGGTGGTCG CGCTGGGCGT GCTGAACTGG GTCACCACCC GCTACCGGAT CACCCCGGAG
CAGGTCGAGC TGCGCACCGG CCTGTTCGTG CGCAAGCGCC TCGCGGTGCC GCGCGACCGC
ATCCGCAGCG TCGACCTGAC CGCGAAGCTG GGCCACCGCC TGTTCGGCCT GTCCGCCGTC
AGGCTGGGCA CGGGCAGCCG CGACCAGCCC GGCGAGGACG GCCTGACGCT GGACGCGGTC
ACGTCGGCGG AGGGCGAGCG GTTGCGCGTG CTGCTGCTCG ACCACGCCCC GCGAACCGGG
CGGTCGCCCG ACGAGGGCCC GCGACCGGTG GAGCCCGGCA CGACGTTGGC CGAGCTGGAC
GTCCGCTGGC TGCGCTACGC CCCGCTGACC CTGTCCGGCC TGGTCGGCAT CGGCGCGCTG
TTCGGCGTGG TGGTGAACTT CGCCCGCGAG CTGGACATCG AGGTGCTGGA CCCGGCGGTG
GACGCCGCGC ACTGGGTGGT CGGGCAGCCG CTCGCGCAGA CCATCGCGGT GTCGGTGCTG
GTGGTGGCGG TGCTGTCGAC GCTGGGCGCG CTGCTGCTGT ACGTGCTCCA GTTCTGGGGC
TACCGGCTGA CCCGCGAGCC GAACGGCACG GTCCGGGTGC GGCGGGGGCT GCTGACGACG
CGCTCGGTGT CGCTGGCCGA GCAGCGGTTG CGCGGCGTGG AGGTGCAGGA GGCGCTGCTG
CTGCGGGCCG GTCGCGGCGC GAAGGCGGTC GCGGTGACCA CCGGTCTGGG CAGCAAGGGC
GAGAGCAGCC TGCTGCTGCC ACCGGCCCCG CGCGCCGAGG CGCACCGGGT GACGAGCGAG
GTGCTGCGGG TCGAGGCGCC GCCGACGACC GCGCCGCTGC GCGGGCACCC GGCCGCGGCG
CTGCGCAGGC GCGTGGTGCG CGCGGTGGGA CCGGCGCTGG TGCTGGTGGC CGCGCTGGTG
GTGTGGGCCC CGTCGTGGGC CTGGCAGGCG GCGCTGCCGC TGGTGCCGCT GGCCGCGCTG
GTCGGCTGGG ACCGCTACCG CTCGCTGGGG CACGCGCTGA CCGATCGCTA CCTGGTGGTG
CGGTCGGGTT CGCTGCTGCG GGAGACGGTG GCGCTGCAGC GCACCGGGAT CATCGGCTGG
CGGGTGCGCC GGACGTTCTT CCAGCGCCGC GCGGGCCTGG TGACCGTGGT GGCCACGACG
GCGGCGGGCG ACGGGCACTA CGCCGTGGTG GACGTCGGCG AGGCGGACGG CCTCGCCGTC
GCCGACGAGG CCGTCCCGGA CCTGCTCAGG CCGTTCTTGC TGCGCCCGTG A
|
|---|
| Protein sequence | MPQTPAPQAL APQADHPLPA YPTAPELNDE LVVDWHRLDA RMVVVRPLNE IIGLVPVLIG
LLVLGNGDGW RVGVSIAVVV LVVALGVLNW VTTRYRITPE QVELRTGLFV RKRLAVPRDR
IRSVDLTAKL GHRLFGLSAV RLGTGSRDQP GEDGLTLDAV TSAEGERLRV LLLDHAPRTG
RSPDEGPRPV EPGTTLAELD VRWLRYAPLT LSGLVGIGAL FGVVVNFARE LDIEVLDPAV
DAAHWVVGQP LAQTIAVSVL VVAVLSTLGA LLLYVLQFWG YRLTREPNGT VRVRRGLLTT
RSVSLAEQRL RGVEVQEALL LRAGRGAKAV AVTTGLGSKG ESSLLLPPAP RAEAHRVTSE
VLRVEAPPTT APLRGHPAAA LRRRVVRAVG PALVLVAALV VWAPSWAWQA ALPLVPLAAL
VGWDRYRSLG HALTDRYLVV RSGSLLRETV ALQRTGIIGW RVRRTFFQRR AGLVTVVATT
AAGDGHYAVV DVGEADGLAV ADEAVPDLLR PFLLRP
|
|---|
| |