| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0848 |
|---|
| Symbol | |
|---|
| ID | 8325011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 930827 |
|---|
| End bp | 932266 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 644941390 |
|---|
| Product | peptidase M20 |
|---|
| Protein accession | YP_003098655 |
|---|
| Protein GI | 256374995 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGGTG ATCCGGAAAA TTCCGAACAT CCCGAGCCCC CCGAGCGCGC GGCGACGACC
GTGCGGGCCG ACGAGTTCCT CGCCGGTCTG CGGGACTGGC TCGCCATCCC CTCCATCGGG
GTCGACCCGG CGCACCACGG CGACGTCGCC AGGTCGGCCG CCTGGCTGGC CGAGGCGCTG
CGCGCCGACG GCTGGCCGGA CGTGCGCGTC TGGGACGAGG GGCCAGCCCA GCCCGCCGTC
TACGCCCACT GGCCGTCCGC CGACCCGGAC GCGCCCGTCG TGCTGGTCTA CGGCCACCAC
GACGTGCAAC CGGTTGACCC GGTCGAGCGG TGGACCCGTC CCCCGTTCGC GCCCACCCTG
GTCGGGGAGG AGCTGTTCGG TCGCGGGGCC AGCGACGACA AGGGCCAGGT CGCCATGCAC
CTGCTGGGCG TGCGCGCCCA CCTGGCCGCG ACCGGCCGCA CCACCCCGGC GGTCACGCTC
AAGCTGTTCG TCGAGGGCGA GGAGGAGGGC GGCTCCCCGC ACATCGCCCG CACCCTCGCC
GACCACGGGG CCGACCTCGA CTGCGACCTG GTGGTCTTCA CCGACACCCC GCTGTACTCC
CGCGAGGCCC CGACCGTGTG CACCGGCCAG CGCGGCGTCT ACGGCGCCGA GGTCGTGCTC
ACCGGCGGTG TCACCGACGT CCACTCCGGC CGGGCGGGCG GCAGCATCCC CAACCCGGCC
ACCGCGCTCG CCAGGCTCGT CGCCGCCCTG CACGACGAGG ACGGCCGCGT CCAGCTCCCC
GGCTTCTACG ACCACGTCGT GCTGCCCACG GACGTCGAGC GCGCCGACTA CGCCTCGCTC
CCCTTCGACG AGGAGGTGTG GCTGACCAAC TCCGGCCGGG CGCGCGGCCT GTCCGGCGAG
ACCGGCTGGT CCACCCTGGA GCGGGTCTGG GTGCGCCCCA CCGCCGAGGT CAACGGCCTG
GTCGCGGGCT ACACCGGGCC GGGTCTGAAG ACCGTCGTGC CCGCCGACGC CCGCGTGAAG
CTGTCGTTCC GGCTGGTGCC CGGCCAGCGC CCCGAGCACG TGGCGGAGGC GCTGCGCGGG
TTCGTCGACG CCCACACCCC CGAGGGGCTG CGCGCCGAGA TCGTCAGCCG GGGCGACGGG
GTGCCGCCGT ACGCGGTGGA CGTCGCGCAC CCGGCGGTCG GCGCGGTCCG CGACGCCCTG
GAGGGCGCCC TCGGCAAGCC GGTCCGGTTC AGCCGCACGG GCGGCTCCGG TCCCGCCGCC
GTGCTGCACG AGACGCTGGG CGTGCCGGTG GTCTACTTCG GCGTGGCGCT GCCCGACGAC
AACATCCACG CGCCCGACGA GCGCGTCGTC GTGCCGCTGC TGCTCTCCGG GGCCGAGGCG
CTGGCCGTGC TGTGGCGCAC CCTGCCGGGC AGGCTCGCGG GCGGGGAGCC GCCGGCGTGA
|
|---|
| Protein sequence | MSGDPENSEH PEPPERAATT VRADEFLAGL RDWLAIPSIG VDPAHHGDVA RSAAWLAEAL
RADGWPDVRV WDEGPAQPAV YAHWPSADPD APVVLVYGHH DVQPVDPVER WTRPPFAPTL
VGEELFGRGA SDDKGQVAMH LLGVRAHLAA TGRTTPAVTL KLFVEGEEEG GSPHIARTLA
DHGADLDCDL VVFTDTPLYS REAPTVCTGQ RGVYGAEVVL TGGVTDVHSG RAGGSIPNPA
TALARLVAAL HDEDGRVQLP GFYDHVVLPT DVERADYASL PFDEEVWLTN SGRARGLSGE
TGWSTLERVW VRPTAEVNGL VAGYTGPGLK TVVPADARVK LSFRLVPGQR PEHVAEALRG
FVDAHTPEGL RAEIVSRGDG VPPYAVDVAH PAVGAVRDAL EGALGKPVRF SRTGGSGPAA
VLHETLGVPV VYFGVALPDD NIHAPDERVV VPLLLSGAEA LAVLWRTLPG RLAGGEPPA
|
|---|
| |