Gene Amir_0602 details

Gene Information

• Locus tag: Amir_0602
• ID: 8324762
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: -
• Start bp: 667782
• End bp: 669695
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 77%
• IMG OID: 644941143
• Product: diguanylate cyclase
• Protein accession: YP_003098411
• Protein GI: 256374751
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGACCAGC GAGCGGACGA GGTCTCCGAC CCCGAGGCCA GGATCAAGGC GCTGCTGAAC 
GCGGGCAGGC TGGCGGAGGC CAACACCACC TTCGACGAGG TGGTCAACCG GCCCCCGCCG 
GGGGCTGACC GCTGGGCGCG CTCCGCCGCC CTGGTCAACC GGGCCAAGCT GGCCTGGCGG 
CTCGGCCGCA TCCCCCTGGC GCTGGAACTG GCCGCCGAGG GCTGGAGCGA CCTGGAGGGC 
GAGGACCCGG ACCACCCGGA CGCCGCTCGG GCCACGCACG CCCTCGCCTA CCTGCTGGAG 
GGCATCGGCA ACCGCCGCGC GGCGGTGGAC ATGATGCGGG TCGCGGTGGG CATCGCGCGC 
CGCGCCGGTG AGGCCGAGGT GCTCGCCATC TGCCTGCAGG GCCTCGGCGG GCTGCTGAAC 
TTCCGGGCGA TCTCGTCGCA GCCGGACGTG GCGCTGGCCG CGTTCGAGGA GGCGCGGCAG 
TGCCTGGCCG AGGGCCTGCC GCTGGCCTCC GACGACCACA TGACGCGGGC GCTGCTGGGC 
GCCTACAGCC GCTCGCTGGC CGGGGTCGGC GAGCTGTGGC AGGCCGAGCT GCACGCCGAC 
GAGACGGTGC GGCGGGCGCT GGTGGCCGAC GACAAGTGGG CGCTGGCGGT CGGCAACTGG 
GTGCTGGCCG TGGTGCACCG CGAGCGCGGC GACCTGCTGC GGGCGCGCAC CCTGGGCAGC 
CGGGCGGTGA CCGCCGCCGA GTCGATCAAC GACCCGTCGC TGCTGCTGCG GTTCTCCCAG 
GACCTGGCGG ACATCTGCGC GGGCCTGGGC GACCCGGTCG GCGAGGCGGC GGCGCTGCGG 
TGCAGCGTGG CGGCGGGCAC GACCGCGACG GTGACCCTGC AGGAGGGGCT CGGGCAGGCG 
CTGGAGCAGC GCAGGGTGGC GGTGCAGGCG CAGCGGTTGG CGGTGGCGGC GCAGGAGGCC 
GCGGCGCGCG ACCCGCTGAC CGGGCTGGCG AACCGGCTCG GCCTGGAGCG GGCCGCCGCG 
ACGCTGCTGG AGGGCACGGC GGCGCGCGGG CGGGTGCCGT GGCTGGTGCT GGTGGACGTG 
GACTGGTTCA AGGACGTCAA CGACGACGCC GGGCACGCGG CCGGTGACGC GACGCTGCGC 
GAGATAGCCC AGCTGCTGCG CCGGGAGACC AGGTCGGACG ACCTGGTGGC GCGGTGGGCG 
GGCGACGAGT TCGTGGTGCT GCTGGGGAAC TCGGCGGGCG GCGGCGGCCC GGAGGCCGGT 
CCGGTGGTGG CCGAGCGGAT CAGGGCGGCG GTGGACGGGC ACGACTGGCA GGTGGTCCTC 
GGGATCACCC GGCGGCCCAC GGTGTCGATC GGGGTCGCGG CGGGGCCCGC GAAGCTGGAC 
CAGCTGTTCG CGGCGGCGGA CATGGCGCTG TACCGGGCGA AGCGGTTGGG GCGCAACCGG 
GTCGAGGTCG AGGGGCCGGG GTCGGAGGGT GGCTCCGAGG GTGGCTCCGA CGGCGGTTCC 
GGGGAGGCGT GCGAGGACGC GGCGGCGGTC GGCGGCGCCG AGGCCGACGG CTCCAGCCGC 
GGGCGGGACG GCGCGGGACG CGGTCGGCCG GGACGCGACG CGCCGCGCGC GGAGCGGGTG 
GAGGCCGGGG AGCCGGAGCC TGAGCAGCCC GAGCCTGAGC GGCCCGAGCC TGAGCGGCCC 
GAGTCCGGGC AGCCCGAGTC CGGGCAGCCG GAAGCCGAGG AGCCGGAAGC CGAGCATCCG 
GAAGTCGTCG CGACCGAAGG GGGCGCGACC GAAGTCGTTG CGGCGGAAGT CGTTGCGACC 
GAAGAACTCC CGGTGCCCGA GCCGACGACG CCCGAGACCG GTGCGCCCGC CGTCGACGCG 
CCCGCCCCCG ACCGCTCGGA CGAGCAACCT CAGGCGATCA GCCCGCCCCG GTAG 

 

Protein sequence

MDQRADEVSD PEARIKALLN AGRLAEANTT FDEVVNRPPP GADRWARSAA LVNRAKLAWR 
LGRIPLALEL AAEGWSDLEG EDPDHPDAAR ATHALAYLLE GIGNRRAAVD MMRVAVGIAR 
RAGEAEVLAI CLQGLGGLLN FRAISSQPDV ALAAFEEARQ CLAEGLPLAS DDHMTRALLG 
AYSRSLAGVG ELWQAELHAD ETVRRALVAD DKWALAVGNW VLAVVHRERG DLLRARTLGS 
RAVTAAESIN DPSLLLRFSQ DLADICAGLG DPVGEAAALR CSVAAGTTAT VTLQEGLGQA 
LEQRRVAVQA QRLAVAAQEA AARDPLTGLA NRLGLERAAA TLLEGTAARG RVPWLVLVDV 
DWFKDVNDDA GHAAGDATLR EIAQLLRRET RSDDLVARWA GDEFVVLLGN SAGGGGPEAG 
PVVAERIRAA VDGHDWQVVL GITRRPTVSI GVAAGPAKLD QLFAAADMAL YRAKRLGRNR 
VEVEGPGSEG GSEGGSDGGS GEACEDAAAV GGAEADGSSR GRDGAGRGRP GRDAPRAERV 
EAGEPEPEQP EPERPEPERP ESGQPESGQP EAEEPEAEHP EVVATEGGAT EVVAAEVVAT 
EELPVPEPTT PETGAPAVDA PAPDRSDEQP QAISPPR