Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_0537 |
Symbol | |
ID | 8324696 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | + |
Start bp | 578435 |
End bp | 580219 |
Gene Length | 1785 bp |
Protein Length | 594 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 644941081 |
Product | hypothetical protein |
Protein accession | YP_003098350 |
Protein GI | 256374690 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000179948 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCCCCC AGGCAGGCAC CGACGTCTCG ACCGCCCAGC AGCGCGACCC GGCCAACCTG GTCGGCGACG TCAAGGGCAC CGCCGACGCG ATCGAGCGCG GCGACTGGGT CGCGGCCGGG CTCGGCATGG CCAACGCCGC CATGAGCGTG GTCGGGCTGG CCGGCAACCC CATGGGCGGG TTGGTCTCGG CCGGGTTCAG CTGGGCCGTG CAGCACGTGT CGTTCCTGAA GGAGCCGTTC GACGCGCTGC TGGGCAACCC GCAGGCGATC ACCAAGATGT CCGACAGCTG GGCCAACGCG GCCAAGCAGG TCGAGTCGAT CGTCGCCGAC TACCGGCGCA CCTCGGTGGA GGAGACGAAG GGCTGGCGGG GCCGGTCGGC GGACGGCTAC CGGGCCGCCG CGACCAAGCA CTCGTCCGGC CTGGAGACGC TGGCGAAGGC GGCCAAGGGC ATCTCCACGG CGGCCAAGGG CGCGGGCGAG CTGGTCGGCA CCGTCCGCAA GACGATCATG GACCTGATCG GCAAGGCCGT CTCCGAGATG GTCATGAAGA TCATCCAGTG GCTGTCGGTG TCCTGGCTGA CCTTCGGCGC CTCCATCGCC GCGGCCATCG GCGACATCGT GCGGATGGCG TGCGACTACG CGAAGAAGTT CGTGGACTTC CTGCAGAAGC TCGCGACCTC GCTGAAGAAG CTCATCGACA TGATCAAGTC CGTCGCGCAG ATCGCGCAGA CCGCCAAGCA GGTCCTGCAG GCGATCACCG CGATGACGCA CTCCAACTCG GCGGGCGCGG CGGGCGCGGG CGCGGCCGGG AACCCCAGGC TCAGCGCGGG CGGCCTCGGG CTGACCGGCG AGCAGCTGGC GAACATGGAC CGGGGGGCGA ACACCCGGTA CAGCGAGAAC GGCAGCGGGA GCACCTGGAC CAGCGGCGCC AACGGCGCGG GCGGCGGAGC CGCGGTGAAC CAGCCGGGTG CGCTCGGGCC TGGTGCGGGC GCGGGGGCTG GTTCCGGCTA CGACGGCGGT TACGGCGGCG CGGGCGGCAG GCCGGTCGTG TCCCAGCCGC CCGTGGTCGG TGGCGGTTTC GGTGGGGTCG GCGGCGGTGC CGGCGGTTCC TACGGGGGCT CCACGGGCGG TTCGTCGGTG TCCAGGCCGC CCACGGTCGG TGGCGGTGTC GGCGGTTCCG GTGGGTCGGG CGGCTACGGC GGCTCCGGCG GCGGTGCCGG CGGTTCGGCA GGCGGCCACT GGGAGCCCGG CCGCTGGGTG CCCGCGGGCA GCGGTGTCAC CGGCGTGACC CCACTGCCCG CGCGCGACGT CACGCACGCG ACCAACACGA CCCCCACGAT CCCCCCGCTG ACCACGCCCC CCATCCCCAC CGTGAAGCCG TTCGGCGGTG ACCTCGGTGG CGGTGGCGGT GCCGGCGGTG GTGCCGGTGG CGGCGGCGGC CCGATGCCCA GCTTCGGCGG TGGTGGCGGC GGCTTCGGCG GTGGTGGTTC CGCAGGCGGC CTGGGCGGCG CAGGCGGCGC CACCCCCCAA CCCATGCAGG CAGGCGGAGC CTCCGGCGTC CTCCCGTCCG GAGCGGCAGG CGGCCCCGCG CCAGGCGCCC CCGGCGGCGC CCCGGCGGGC GGCGCACGAG GCGCAGGCGG CGGCATGGGC ATGATGGGCG GAGCCCCGAT GGCCCCGATG GGGGGCCAGG AGGGCGGCAA GGACCACCAG CGCAAGGTCC GAATCCAGGG CGACCCCCTG GCCGAGGAGC CGCCGAAGGC GGCAAAGCCG GTAATCGGCG AATAA
|
Protein sequence | MTPQAGTDVS TAQQRDPANL VGDVKGTADA IERGDWVAAG LGMANAAMSV VGLAGNPMGG LVSAGFSWAV QHVSFLKEPF DALLGNPQAI TKMSDSWANA AKQVESIVAD YRRTSVEETK GWRGRSADGY RAAATKHSSG LETLAKAAKG ISTAAKGAGE LVGTVRKTIM DLIGKAVSEM VMKIIQWLSV SWLTFGASIA AAIGDIVRMA CDYAKKFVDF LQKLATSLKK LIDMIKSVAQ IAQTAKQVLQ AITAMTHSNS AGAAGAGAAG NPRLSAGGLG LTGEQLANMD RGANTRYSEN GSGSTWTSGA NGAGGGAAVN QPGALGPGAG AGAGSGYDGG YGGAGGRPVV SQPPVVGGGF GGVGGGAGGS YGGSTGGSSV SRPPTVGGGV GGSGGSGGYG GSGGGAGGSA GGHWEPGRWV PAGSGVTGVT PLPARDVTHA TNTTPTIPPL TTPPIPTVKP FGGDLGGGGG AGGGAGGGGG PMPSFGGGGG GFGGGGSAGG LGGAGGATPQ PMQAGGASGV LPSGAAGGPA PGAPGGAPAG GARGAGGGMG MMGGAPMAPM GGQEGGKDHQ RKVRIQGDPL AEEPPKAAKP VIGE
|
| |