| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_0205 |
|---|
| Symbol | |
|---|
| ID | 8324361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 225081 |
|---|
| End bp | 228347 |
|---|
| Gene Length | 3267 bp |
|---|
| Protein Length | 1088 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 644940750 |
|---|
| Product | transcriptional regulator, SARP family |
|---|
| Protein accession | YP_003098022 |
|---|
| Protein GI | 256374362 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3629] DNA-binding transcriptional activator of the SARP family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGCGAGC AGCTCGAGCT GGGCGTCCTC GGACCGCTGC GGGTGGTGGT CGGCGGGCGG
CACGTCGCGG TGCGCGCGGG CAGGCAGCGG TGCCTGCTGG CGTCCCTGCT GACGCGGCCG
GGATCGCCGG TCTCGGTGGA CGAGCTGGCC GAGCACGTGT GGGGCGACCG GCCGCCCGCG
CGGGCCAGGC AGACCCTGCA CACCTACGTC ATGCGGCTGC GCAGGCTCCT CGGCCCGGAG
GTGCCGATCC GGACCGTCCC GGACGGCTAC CTGGTGGACG TCCCGGCCGC CTCCGTGGAC
GTCGCCAGGT TCGACGGGCT GCTCGCGCTC GGCGACCGCG AGCAGGCCGC CGGACGGCTC
GCCGAGGCCT CGTCCGCGCT GGCAGCGGCC TTGGAGCTGT GGCGGGGACC GGCGCTGGCG
GACGTCCCGT CGGCGGTGCT GCACCGCGAC GAGGCGCCCC GGCTGACCGA GTGCGGGCTG
CACGCGCGAG AGCGCCGAGC GGAGGTCGAC CTGGCGCTCG GGCGGCACGC CGAACTGGTG
CCGGAGCTGA CCGCGCTGAC CGCCGAGCAC CCCCTGCGGG AGCGCCTGTG GGCGCAGCTC
GTGGTGGCCC TGCACCGCTC GGGAAGGCGG GCCGAGGCGC TGGCCGCGTA CGACCGGGTG
AGCGCCCTCC TGGCCGAGGA GCTGGGCATC GACCCCGGCG GGGAGCTGCG CCGCGTGCAC
CGGGCCGTGC TGGCCGACGA GGGCGGTCCC GCCCCTGGTC CGGAGGGGGC GGAGAGCGGT
CCGGAACCGG TCGCGCCGTC CCAGCTCCCG GCGGGCGCCG GGGACTTCGT GGGGCGCTCG
AACTCGGTTC ACCTCGTGGA AACACTGCTG CGCAGATCAC ACGGTGTGCC GGTCGTCACC
TTGTCCGGGC AACCCGGAGT AGGTAAAACC GCCCTCGCCG TGCACGCCGC GCACCGGTTG
CGCGGGGACT TCCCGGACGG TCAGCTGTAC GTGAACCTGC GTGGACACGC CCAGGGGCCG
CCGCTGAGCG CCGTGGACGT GCTGCCGAGG TTCCTGCGCG CCCAGGGCGT CGCCCCCGAG
TCGGTGCCGC TGGACCCGGA CGAGCAGGAG GCCCTCTACC GCTCCCGGCT GACCGGCAGG
CGGGTGCTGG TGGTGCTGGA CGACGCGGCG AGCGCCGAGC AGATCCGCCC GCTGCTGCCC
GGCTCCCCCG GTTGCGCCGT CCTGGTGACC AGCCGGGACG CGCTGCGCGG CCTGGCGGTC
AGCCACGCGG CCACGAACGT GCGCCTGGAC GTGCTCGACG ACGGCGAGGC CAGGGCGCTG
CTGTCCGGGG TGCTCGGCGC GGACGTGGTC GGCTGCCAGC GCGCCGCCAC CGGCGAGCTG
GTGGCCCTGT GCGCCCACCT GCCGCTGGCG CTGCGGATCG CCGCCGCGAA CGTGCTGAGC
AGACCGGGGA CCACCGTCGC CGAGCACGTG GAGGAGCTGC GCGCGGGCAA CCGGCTGGCG
GCGCTGAGCG TGGAGGGCGA CGAGCGGGCC GCCGTGCAGG CCGCGTTCGA CCTGTCGTAC
GCCGCCCTCA AGCCGGAGCT GGCGCAGCTG TTCCGGCTGC TGGCGGTGGC CCCCGGCGAC
CTCACCCCGG ACCTGGCGGC GGCGCTGGGC GGCCTGCCCG TCCCGGAGGC CCGCAGGCGC
CTGCACCGGC TGGCCACGGT GAACCTGGTC GACCGGCCCG CGCCGGGCCG CTACCAGTTC
CACGACCTGC TCAGGGACTA CGCGGCCCAG CGCCTGGTGG CCGAGGACGG CGAGGCGGGC
CGGGACCGGG TGTTCCGCAG GCTGCTGGAC TGGTCGATCC GCTCGGTGGA CGCCGCCACC
GAGGCGCTCA AGAGCACCCT GGTGCGCCAC CCTCGCGCCT CGGACGTGCC GGGAGTGGAG
CCGAAGCGGT TCGACTCGCC AGCCGAGGCG CTGGCCTGGT TGGACGCGGA GCGGGCGAAC
CTGGTGGCGC TGGTGTCCCA CGCCGCCGCG CGCCCGCCGC ACGAGGACGG CTGGCAGTTG
GCGGACGCGC TGCGCCGCTA CTTCTACCTG GCGGCGCTGC CGGTGGAGTG GCGGGCGGCG
GCGGGCGCGG GCCTGGCGTC GGCGCGGGCC GCGCGGGACC CGGTGGGCGA GGCGGCGATG
CTGTCGTCGC TGGGGGTCCT GTACTGGTCG ATCGGCAGGC ACCCGGTGGC CGTCGACCAC
TTCCTGTCGG CCCTGGGCGT GCAGGAGCGC GGCGGGGCGT GGCCGAGGGC GCGGGCGCAG
GTCCTGGCGA ACCTGGGGGC CGTGTACATC GACGTGGGCG AGCTGGAGCG GGCGACCGAG
CACCTGGAGC GGGCGCTGGC CATCACCGGG GAGATCGGCG CGCTCCAGCA GCAGGGCATC
ACCCAGCTGA ACCTCGGCGG CGTGTACCTC CAGCTGGCCG AGCTGGACCG GGCCGCGGCG
TGCTTCGAGG GCGCGCTGGA CGTCGGCACG CGCCTCGGGG TGTGGATGAC CCAGGCGGAC
GCGCTGCACG CGCTGGCCGA GGTGGAGCTG CTCAGGGGCG CGCCCGCGCG GGCGGCGGGC
CTGTTCGAGC GCTCGGGCGA GCTGTACGGG CTGGCCGGGG CGCGGAGCTT CGCGCACATC
CCGCACGAGG GGCTGGCGCA GGCGCACCTG GCGCGGGGCC GGTACGCGGA GGCCATCGCG
GAGGCGGGCC GGGCGCTGGA GTTCGCGCAG GAGCGGGAGA ACCTGAAGGG CCGCTGCGAC
GCGAAGAACG TGCTGGGGCA GGCCTTGGTG GGCGCGGGGC GGCTCGTGGA GGGCGCCGGG
CGGCACACCG AGGCGCTGGG CATCGCCGAG GAGATCAGCT ACCCGTGGGG CATCGTGGCC
GCCCGCAGGG GCCTGGCGAC GGCGCACCAC GCGGCGGGCC GCCTGGTGGA GGCCGAGGAG
GCGGCGCGGG GGGCCCTGGA GGGCGCGGCG GCCTACCGGC TGCGGCTGCC CGAGGGCGAC
GTCCTGGTGC TGCTGGGCCG GATCGAGCTG GACCTCGGCG AGCCTGACCG TGCGTTGGAC
ACGGCGACCC GCGCCGCGGC GGCGGGAGCG GCCTCGGGGA GGCGCCTGCT CGCGGCCCAG
GCCGACCACC TGCTCGGGGA CCTGAGGGCG GCAGCGGGCG ATTCCAGGGC CGCACGGGCC
CTCTGGGACG CCGCTGCGGC GGGCTACGAG TCCGCGGGAG CCCCGGAGGC GACGTCTCTC
AGAACCCTCC TGCGCCGCGT GTCCTGA
|
|---|
| Protein sequence | MGEQLELGVL GPLRVVVGGR HVAVRAGRQR CLLASLLTRP GSPVSVDELA EHVWGDRPPA
RARQTLHTYV MRLRRLLGPE VPIRTVPDGY LVDVPAASVD VARFDGLLAL GDREQAAGRL
AEASSALAAA LELWRGPALA DVPSAVLHRD EAPRLTECGL HARERRAEVD LALGRHAELV
PELTALTAEH PLRERLWAQL VVALHRSGRR AEALAAYDRV SALLAEELGI DPGGELRRVH
RAVLADEGGP APGPEGAESG PEPVAPSQLP AGAGDFVGRS NSVHLVETLL RRSHGVPVVT
LSGQPGVGKT ALAVHAAHRL RGDFPDGQLY VNLRGHAQGP PLSAVDVLPR FLRAQGVAPE
SVPLDPDEQE ALYRSRLTGR RVLVVLDDAA SAEQIRPLLP GSPGCAVLVT SRDALRGLAV
SHAATNVRLD VLDDGEARAL LSGVLGADVV GCQRAATGEL VALCAHLPLA LRIAAANVLS
RPGTTVAEHV EELRAGNRLA ALSVEGDERA AVQAAFDLSY AALKPELAQL FRLLAVAPGD
LTPDLAAALG GLPVPEARRR LHRLATVNLV DRPAPGRYQF HDLLRDYAAQ RLVAEDGEAG
RDRVFRRLLD WSIRSVDAAT EALKSTLVRH PRASDVPGVE PKRFDSPAEA LAWLDAERAN
LVALVSHAAA RPPHEDGWQL ADALRRYFYL AALPVEWRAA AGAGLASARA ARDPVGEAAM
LSSLGVLYWS IGRHPVAVDH FLSALGVQER GGAWPRARAQ VLANLGAVYI DVGELERATE
HLERALAITG EIGALQQQGI TQLNLGGVYL QLAELDRAAA CFEGALDVGT RLGVWMTQAD
ALHALAEVEL LRGAPARAAG LFERSGELYG LAGARSFAHI PHEGLAQAHL ARGRYAEAIA
EAGRALEFAQ ERENLKGRCD AKNVLGQALV GAGRLVEGAG RHTEALGIAE EISYPWGIVA
ARRGLATAHH AAGRLVEAEE AARGALEGAA AYRLRLPEGD VLVLLGRIEL DLGEPDRALD
TATRAAAAGA ASGRRLLAAQ ADHLLGDLRA AAGDSRAARA LWDAAAAGYE SAGAPEATSL
RTLLRRVS
|
|---|
| |