| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4220 |
|---|
| Symbol | |
|---|
| ID | 8255356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 5098744 |
|---|
| End bp | 5099676 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644937886 |
|---|
| Product | LysR substrate-binding |
|---|
| Protein accession | YP_003094473 |
|---|
| Protein GI | 255534101 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.829195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTGG TACAACTGGA ATACATTGTA GCTGTAGATA CTTACAGAAG TTTTGTGGGC
GCCGCAGAAA AATGCTTTGT TACCCAACCT ACTTTGAGCA TGCAGGTGCA AAAACTGGAA
GAAATGCTCA ATGTAAAAAT CTTTGACCGC AGCAAACAGC CCGTTATACC TACTGAAATT
GGTACCCAGA TTATTGAGCA GGCGCGCCTG GTTTTACAGG AAAGCCTGAA AATTAAAGAG
ATCATCAGCA ACCAGCAGCA GGAGGTAAGT GGCGAGCTTA AGGTAGGCAT CATCCCTACT
GTAGCCCCTT ATTTATTGCC TAAAGTGATT GCCGCAATGA TGGAGAAATT TCCGGATCTG
AAGTTATTGA TCTGGGAGTA TACCACTGAA GATATTATCC ACCACCTTAA AACAGGGGTG
CTCGACTGCG GGATCCTGGC AACCCCTTTG GTTGATGCGG TTATAGAAGA AGTGCCTCTT
TATTACGAAA ATTTTGTCAC TTACATCAGT AAAAACAGTA AACTTTATAA AAAGAGGACC
ATCGACGCCA ACGACCTGGA AGATGAGAAT ATCTGGCTGT TAAATGAAGG CCATTGCATG
CGCTCACAGG TATTAAATAT CTGTCGGTCA ACCAAACACA ACCGGCTTCA GGGCCTTACC
TATAATACAG GAAGCGTAGA AACACTGATC CGTATGGTAG ACAGGAACAA TGGCGCGACA
TTGTTACCCG AACTGGCGCT GGAAGAGCTG AGCAGCAGAC AGCTGAGCAA GGTAAGGCAT
TTCAAATCAC CCGAACCGGT AAGGGAAATC AGCCTGGTCA CGCATAAAAA CTTCATTAAG
AAACGGATGT TAAATGCCTT GAAAGAAGAA ATCCTTGCCG TAGTCCCGAA AGCCATGAGG
CAGAAAAAGA AAAGGGATGT TGTAGGGATA TAA
|
|---|
| Protein sequence | MTLVQLEYIV AVDTYRSFVG AAEKCFVTQP TLSMQVQKLE EMLNVKIFDR SKQPVIPTEI
GTQIIEQARL VLQESLKIKE IISNQQQEVS GELKVGIIPT VAPYLLPKVI AAMMEKFPDL
KLLIWEYTTE DIIHHLKTGV LDCGILATPL VDAVIEEVPL YYENFVTYIS KNSKLYKKRT
IDANDLEDEN IWLLNEGHCM RSQVLNICRS TKHNRLQGLT YNTGSVETLI RMVDRNNGAT
LLPELALEEL SSRQLSKVRH FKSPEPVREI SLVTHKNFIK KRMLNALKEE ILAVVPKAMR
QKKKRDVVGI
|
|---|
| |