| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4140 |
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| Symbol | |
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| ID | 8255275 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 5007986 |
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| End bp | 5008732 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644937805 |
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| Product | regulatory protein DeoR |
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| Protein accession | YP_003094393 |
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| Protein GI | 255534021 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
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| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.238976 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.377533 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTTAAAA AGGAACGCCA TGATTTTGTG ATGCGCCAGA TCAATTTGCA TAACCGCGTA
CTCACATCAG ATCTTGTACA GTTATTAAAC GTTTCAGAGG ATACGATCCG ACGGGACCTC
CAGGAGTTGG CAGAATGGGG ACAGCTTTCA AAAGTTCATG GCGGTGCACT GTCCAAGTCT
TACCAATCTT CTTTTGACGA CAGCGAAGTT TATGCGAAAG ACGCTAAAAT CATTATTGCT
AAAAAGACGT TACAGCTCAT CAAGGATGGG ATGGTGATTC TGACCGGGGG CGGAACATCC
ATTATAGAGT TGGTAAAACG CTTACCAGAA AATTTAACTG CTACATTTTT TACCATTAGT
CCTTTTGTAG CTATAGAGCT ATCTAAGTAT ACCAGAGTCG AAGTTATTCT TATAGGAGGT
TTATTTTCCA AAAATTCGCA GGTAACTTAT GGGGGCCATG TCATCAACCA GCTCTCGGAG
ATCAATGCCG ATCTTTGCCT GCTGGGAACC AGTGCCATAC ACCCGCAAGA TGGATTAACT
GATACAGACT GGGAAATCAA TCAGCTTAAA AAAGCCATTT TCAGTTCCTC AAAAAGAGCA
GCAATTCTGT GTATTTCAGA AAAACTGAAC ATCTCATTAA GATTAAAGGT CGCTTCATTA
GAAAATATAG ACTACCTGAT CACAGAGCTT GAACCTGAAG CAATAGAACT TAATCCATAT
AGGGTGAAGA CTTTACAGAT ACATTAA
|
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| Protein sequence | MLKKERHDFV MRQINLHNRV LTSDLVQLLN VSEDTIRRDL QELAEWGQLS KVHGGALSKS
YQSSFDDSEV YAKDAKIIIA KKTLQLIKDG MVILTGGGTS IIELVKRLPE NLTATFFTIS
PFVAIELSKY TRVEVILIGG LFSKNSQVTY GGHVINQLSE INADLCLLGT SAIHPQDGLT
DTDWEINQLK KAIFSSSKRA AILCISEKLN ISLRLKVASL ENIDYLITEL EPEAIELNPY
RVKTLQIH
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