| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4139 |
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| Symbol | |
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| ID | 8255274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 5004320 |
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| End bp | 5007739 |
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| Gene Length | 3420 bp |
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| Protein Length | 1139 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644937804 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003094392 |
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| Protein GI | 255534020 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.380719 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAA AACTACTATT ACTTTTTGTG GGCATTTCTT TGTTGTTTAC GCAAACGTTT
GCGCAACAAA TTACAGTAAC CGGTATGGTT ACGTCATCAG GTGACGGGTT GCCCATACCC
GGAGCTTCTG TAAAAATTAA AGGAACCCAG ATTGGTACCC AGACCAAAGC TAGCGGAACC
TATTCTATCA GTGCAAAAAA AGGAGATGTA CTGGTCTTCT CTTACATCGG CTCCTTAACA
CAGGAAAGAA CAGTTAGCGG GACAACTCTT AATGTAGTCC TTAGAGAAGA TGACAAGGCG
CTTAATGAAA TTGTTGTGGT GGGTTATGGT ACGCAAAGGA AAGCAAACCT GACCGGTGCA
GTTACTTCTA TCGATGTAAA TAAGACCCTT TCTGGGCGGC CTATTGCTGA TGTTGGAAGA
GCGCTGCAGG GGGTTGCGTC AGGATTAAGT GTGGTTGTTC CAAGCGGAGA GGTCGGCTCA
GATCCGCTGA TTAAGATCAG GGGGCAGATT GGATCATTCA GAGGTACCGC ACAGCCATTA
ATTTTATTGG ATAACGTTGA GATACCCAGT ATTCAATTGG TTAACCCTGC TGATATTGCC
AGTATTTCTG TGTTAAAGGA TGCTGCTGCT TCATCTATTT ATGGTGCCAA AGCCGCATTT
GGGGTAATAC TGATCACTAC AAAGACAGGC TCAGGCTCTG ACAAGCCTAC CATCACTTAT
ACCAATAACT TTTCTTTCCA GAATCCATGG AAAGACCTGA GGATGGGTGA GGTTAGTGCC
TTAAAATATA CGGTGGATGC TGCTGAGCGT ATTGGCACAT TTACACCTAC AGGAGCATTT
TATTATGTAG ATCGTGCCAG CTATCAAAAA GCAGTAGAAT GGCAGAATAA GTATGGGGGT
ACAATAGGTT CCAATGATCC TACAGTTTTT GGAAGAGATT GGTACGTGCA GGGGCCAGAT
AACCAGAAGA TGGGGGTGAG GACCTATAAT CCATACGACT TGATGGTTAA AGAGTGGGCG
CCAACCCAGC AGCATAACCT GTCAATTGGT GGTACCACAG GTAAAACCAG TTACAATATT
GGCTTGGCTG CATTGAACCA GAGCGGTATG ATGAAACCTG CCAAATCGGA TAAATTTACC
CGGTATAATG GTTCGGTAAA AGTTTCAAGT GAACTTAACG ATTACGTTAC GGTTCGTGGA
GGAGCTATTT TCTCTCAAAG AAACAAGGAG TATGCCTATA TCACCAACTC TACTACCGCC
GATCCATGGT TGTATCTTTA CCGTTGGGGC CCGTTATATC CGTTTGGTAA TGATGAAAAT
GGAGACCCGA TACGAAGTCC TGCAAGCGAA GCTGCTGCGG CCAATACAGC CAATATTCTG
CAAACTTATT TTAACGCGAA TGCGGGTGCT ACAGTTAACA TCACAAAAAA CTGGAAAGTA
GATTTTGATT ACACCTATTC CAGACAAGAT ACAGCCTGGC GGCGTCCGGG TACCAGGTAT
ACTGCCAGAA ACTCCTGGGT TGCGCCCAGA GCCAGGGTAG ATGCAAGTGG ACAACCTGTT
TATGTGAACT CAGAGGGCCA GGTAGTGTCT AGTACTACTC CTGGTGCTAT CCGTGCATTT
GATCTTTTAA AAGAAACCTA TACTGCTTCA GGATCTAACC CGGACCACAT GTACAGATTT
GTGGGTAACT GGTATAGCCA TACGATTAAT GCTTTTACTA CTTATAACCT GAAATTAAAG
GAAGACCACG ATTTTAAATT TATATTAGGT TTAAACCGGG TTGCTGTTAC CAATGAGTCG
CAGTTTACGC AGATTACAAA CCTTACAGAT ATCTCAAATC CTCAGTTTAA TTTCGCGGCA
GGTACCACTA CAGGTGGGGG AAATTTGTAT AAGGAGGCGC AACTTGGCTA TTTTGGCCGT
GTCAATTATG CCTTCAAAAA TAAATACCTT TTGGAAGCCA ACTTACGTTA TGATGGAACC
TCTAAGTTTC CGCGTGACTT ATGGTGGCGG TGGTTTCCAT CTTTCTCTGC AGGATGGGTA
GCCAGCGAAG AACAATTTAT GGAGTGGGCT AAACCTTCCC TGTCTATGTT AAAGGTAAGG
GGCTCCTGGG GTTCTATCGG AGATCAGACC GTGTCTCCGG GCTTGTACAT CTCTCAAATG
CCTAATGGAC TTTCTAACTG GATCAGTGGC GGAATACGTG CACCTTTTGT TGGAACGCCA
ACAGCCGTAC AGTCTTCTAT TACATGGCAG GATATTGAAA CTAAGAATCT TGGTCTGGAC
CTGGGCTTCT TTAATAATAG TTTGACTGCA ACTGTTGATG TTTATCAGCG GAAAACAAAA
AATGCCATTG TTCCTAAGGA AGGGATCCCG CTTACTTTTG GTGTGACTGC GCCGGTTGGT
AATTATGGGG AGTTAAGTAC TAAAGGTTTA GAATTGGCTG TTGAATATAA CCATAAGTTT
GGAAATGGTG TTGGAATTAA TGTCCAGGCC AATTATACGG ATGCAAAAAC TACCATTACC
AAGTATGGTA CGCTTACCGG GGTGAATGAC AATTATGTAG GCCGAACCAT TGGTGACATC
TGGGGATACC GCACAGATCG GTTGTTTCAA CTGAGCGACT TTGACCTGGA TGCCAACGGA
AAGCCTCAGT TGATTACTTT AACTGCTGCT GAAAGTGCTT TGAATGCTGG TAAAAAAGCT
TATAAATTAA AACCTGGGCC TAATGGTGAG AAGCCGGTTT ATCAGCCATT TCTGCAAACC
TCTTCAAACT TTTATTTTGG ACCTGGGGAT GTTAAGTTTG TGGATGTAAA TGGGGATGGT
GAAATCAGCA ATGGAAAAGG ATTGCTGGCT GATCATGGCG ACCAGGAGAT TATTGGTAAT
GCCAATCCCA GATATGAATA TGGTTTCAGA TTAGGGGCCG ACTATAAAGG ATTTGACATC
AGTGCTTTCT TCCAGGGTGT AGGCAGTCGT AAGATCTGGG GAGATGGGTT CCTGGCCATT
CCTGGCTATA ACTCTTCTGA TGGTGCAATG CCGGCAGCCT TTTCTGAAAA TTACTGGACT
CCAGAAAATA CCGGTGCTTT TTATCCGGCA GCCTATAATA ACGGAGCTAG TAATAACGCA
AATAACATGC AGATTCAGGA TCGGTACCTG TTAAATATGG CCTATCTGAG GCTTAAAAAC
TTAACTTTGG GTTATTCATT CCCACCTGCT TTATTGAAAA AGATAAGTTT AAGCTCGCTT
AGGGTATATG CAGCTGTAGA GAACTTAATC ACATGGGATA AACTTGGAGA CCTGCCTATC
GATCCGGAAG CGATCAACGG TTATTCTATG TGGAACATTT CCAATTATAA CTCGGGTCGT
ACAGCCACAG GGGTACCTGC TTTTAAAAGT ATATCGTTTG GTGTTCAATT AAACTTTTAA
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| Protein sequence | MKRKLLLLFV GISLLFTQTF AQQITVTGMV TSSGDGLPIP GASVKIKGTQ IGTQTKASGT
YSISAKKGDV LVFSYIGSLT QERTVSGTTL NVVLREDDKA LNEIVVVGYG TQRKANLTGA
VTSIDVNKTL SGRPIADVGR ALQGVASGLS VVVPSGEVGS DPLIKIRGQI GSFRGTAQPL
ILLDNVEIPS IQLVNPADIA SISVLKDAAA SSIYGAKAAF GVILITTKTG SGSDKPTITY
TNNFSFQNPW KDLRMGEVSA LKYTVDAAER IGTFTPTGAF YYVDRASYQK AVEWQNKYGG
TIGSNDPTVF GRDWYVQGPD NQKMGVRTYN PYDLMVKEWA PTQQHNLSIG GTTGKTSYNI
GLAALNQSGM MKPAKSDKFT RYNGSVKVSS ELNDYVTVRG GAIFSQRNKE YAYITNSTTA
DPWLYLYRWG PLYPFGNDEN GDPIRSPASE AAAANTANIL QTYFNANAGA TVNITKNWKV
DFDYTYSRQD TAWRRPGTRY TARNSWVAPR ARVDASGQPV YVNSEGQVVS STTPGAIRAF
DLLKETYTAS GSNPDHMYRF VGNWYSHTIN AFTTYNLKLK EDHDFKFILG LNRVAVTNES
QFTQITNLTD ISNPQFNFAA GTTTGGGNLY KEAQLGYFGR VNYAFKNKYL LEANLRYDGT
SKFPRDLWWR WFPSFSAGWV ASEEQFMEWA KPSLSMLKVR GSWGSIGDQT VSPGLYISQM
PNGLSNWISG GIRAPFVGTP TAVQSSITWQ DIETKNLGLD LGFFNNSLTA TVDVYQRKTK
NAIVPKEGIP LTFGVTAPVG NYGELSTKGL ELAVEYNHKF GNGVGINVQA NYTDAKTTIT
KYGTLTGVND NYVGRTIGDI WGYRTDRLFQ LSDFDLDANG KPQLITLTAA ESALNAGKKA
YKLKPGPNGE KPVYQPFLQT SSNFYFGPGD VKFVDVNGDG EISNGKGLLA DHGDQEIIGN
ANPRYEYGFR LGADYKGFDI SAFFQGVGSR KIWGDGFLAI PGYNSSDGAM PAAFSENYWT
PENTGAFYPA AYNNGASNNA NNMQIQDRYL LNMAYLRLKN LTLGYSFPPA LLKKISLSSL
RVYAAVENLI TWDKLGDLPI DPEAINGYSM WNISNYNSGR TATGVPAFKS ISFGVQLNF
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