| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_4008 |
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| Symbol | |
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| ID | 8255142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4843794 |
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| End bp | 4847918 |
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| Gene Length | 4125 bp |
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| Protein Length | 1374 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644937672 |
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| Product | response regulator receiver |
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| Protein accession | YP_003094261 |
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| Protein GI | 255533889 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.702059 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGGCC TTTTTAAATT TTATTTCTCG GTTGTTTTAA TTTGTTTTTC GAAATTCTCT
TCTGCAATTA CGGGCGGTGA TCCGGTGGAG TTTTATTTCC AGCAATATGA TAACCGCAAT
GGTTTGTCGA ACAGTGCCGT AAATATTGTT TTTCAGGATA AAGACCAATT GTTGTGGGTA
GGCACCTGGG ACGGGCTAAA TATGTATGAT GGTACAGACT TCAGGGTTTT TAACTACAAT
AGCGAAAATC AGGGGAGGAG TATTGGCAAC AATGTGATAC AGGATATTAA AGAAGACAGA
GCTGGTAATA TCTGGATCAG TACAATTGGT GGGATTACGC GTTTTGAGAA ACCTAGTGGA
AAATTTTACA GGTATTTTTA TAACCAGGCT ACAAAAAGAA GTATTGCTGA AAAGGAATAT
GAACTGGCGG TAACAGAAGA AGGGATTGTA TTTTGTTACA GTAAAACCTA TGGTTTAAGC
CGTTTTGACT TTCAAAGTAA CCAGTTTAAG CAGATTCCCT TTCCGGGGCT GAAGGTGAAA
GCGTTAAAGA TGGAAAGCGG AAGGGGGGGG CTGATGTGGT TCCTTAAAAA TGATGGGACA
TTACTGGCTT GTAAGGTAAC TGCGGCTGGA CTAAGTCCGT ACCGGATAAT CAAATTGCCT
TCCCAGGTTA ATAACTTTTT TACTGCAAAT CAACGCATGC TTTTTACAGA TACCGATAAT
AACCTATGGA CGGTTGACAA CGGGTTCCAG CCTAAAAAAA TAAAGAATAT CGCTGCGGTA
AAATCGGTCA TTTATTACCA TTCTCACTAT ATAGTGGCCT TTGATGGACA GGGGATTGGT
GTTTATAATG ATGATTTTGA ATCCTCTTCA TTTATGCAGG AAGAGGTTAA GCAGTTGGCC
AATACCAGGG TTACCACCCT TGAGCCGGCA AAGGACAGCG TATTATGGGT AGGGACTGAT
GGGAACGGGC TGATCAAAAT TTATCCTAAA GTGAATCATT TTGGTCTTGT GAACTGGACT
AATTTTGCTG ACCTGAATAA GCCTGTCCGT GCTTTTGCGG CAACAGATGG CAATTTATGG
GTAGGTACCA AGGGGAAGGG AATCGTAATT TTAAAGGATT TTAATGGAAG TTTTGCTGTT
CAGCAATTAA AGGAAGGATT GAGTACGGCT AACGGACTTG ATAACAATTC CGTGTATGCT
TTAAAAAGGG GAAGAGCACC ATATATCTAT ATAGGTACAG ACGGGCAGGG CTTGGGAATT
TATGACCTGC GGGCAAAAAA GGTCATCAGA TGGCAGGAGC TGGCCGGAAC AGCAGAATTG
CCGGCTTTTG GTTCTGTGTA TGCCATTTTA GAAGATAGGG ACAGTTCTTT GTGGCTGGGC
ACCAGTGGAA ACGGGCTGAT CCATTTAAAA CTTACAAGAA ATACATCAGG TATGTTAAGT
GTAAGTGATT TTAAACAATA TCTTTCGGGC AAACAAAACG GTCCGGCCAA TGATATCATT
TATGCTTTAA GCAATGGTGA TGATGAGCGG TTATGGATAG CCTGCCGTTA TGGTGGCTTA
AGTGTACTGG ATAAAAGGAC TGGCAGGTTT AAAACCTTTA AGGCCTTTTC CTATCCAAAC
AGTCTGTCAA ACAACGATGT CCTTTCCCTG TATAAAGATA GCCGCAAAAG GTTATGGATA
GGCACCAGTT ATGGGTTAAA CATGCTCAGT GAAGAAGAAT CGGTAAAGGA CAGCCCCGTG
TTTAAGAAGT TTACCATGAA CGATGGTTTG CCAAACAATA CCATTCATGC TATTGAAGCG
GCAAATTCCG GAAATATCTG GGTTAGCACC AATAAAGGTC TGGCCAGGTT AAATCCGGTT
GATGGGGCTA TTGCCAGTTT CAGGGAAAGT GACGGATTGC AGAGCAACGA ATTTAGTGAT
GGCGCAGTTT GGAAATCGGC CTCAGGGAAG CTTTATTTTG GCGGTATCTA TGGCTTCAAT
TATTTTATCC CTGAAAATAT TACGGGGAAC AAGCTGCAGC CTAATTTATT GGTCTCAGGA
ATCCAGCTGG GTGGTAAAAA TCTGGATGAA AACCGCCTGC AGGTGTTGAA TACTGTTCAG
GCCGAAATAC CTGAATATAC GGTGCCGCGT AAAAGTAATT TCTTTCAGCT GAGTTTAAAG
CCCATGAGTT TTTTAAATGA AGCTAAAAAT GAATTTGCCT ATAAGCTGGA TGGGCTGGAT
AAGAACTGGA ACTATTCGGG CGGGGTTGGT AATATTGTGT ACAACAATGT GCCACCGGGT
AATTATACGA TGCGGGTAAG GTGGAGTAAT GGTGAGGGGG TTTGGACGGA TGGTGTAGGG
GTATTCAAAC TGCAGGTGGA GCAATATTTC TGGCTGAGTT ATCCGGCCCT TTTTACTTAT
TTTATAATTG TTGTAGCTTC AGGCTATGCT TTTCATCTAT ATCGAAAAAA TAAGCTGCAA
ATGAAGTATC AGTTGCAGAT GGAGCACCTT TTAAGGCAAA AGGATGAAGC TGTACATCAG
CAGCGCTTGA ATTTCTTTAC CAATATTGCA CATGAGATCC AGACACCTTT AACAATGATC
ATGGGCTCGG TAGAACACTA TTTACGCAGC AAAAAATCGG AGTTGCTTAA AAATAAGGAA
AACAATTATT TTATTTCTAT TGTACACCAG CATACGGCAA GGTTAACTTA CCTGGTGCAG
CAATTGCTGG AATTCAGAAA AGCTGAAGCA GGTTATCTGA AAAGAAACGA CGACTATGTG
GACATCAGCA AGATGCTGGA AAGTTTATCA GAACTGTTTG TCCCCGCCAG TAGGAAGAAC
AGTCAGCAAT ACCTGAGGAC CATACAAAGT GGGATTGCAG GATTTATAGA TAAGGATAAG
TTTGAGAAAA TTCTGTTTAA CCTGCTGTCC AATGCCTTTA AACATTCGGG CCCTCAGGAA
ACTGTGGTGT TTAAGGCCGG TTATCATCAG GAAGCTGAGT TGCTGGAAGT TAGTGTGTCT
AACTCGGGCT GCACTTTAAA GCAGGAACAC CTGGAGCAGA TCTTCAACAA GTTTTATGTG
AGCAATGAAC AGCAAACGGA AAAGTTTAGT ACTGGTATTG GCCTGGCTTT TACCAAAGAG
CTGGTTACGC TGATGGATGC AGATATTAAA GTAAGTTTGC AGGAAGGCTG GATAGATTTT
ATGGTAAAGG TGCAGCTCCC TACATCGGAA GGTAAGGATG CCAAAGTCAT TACTTCAGCG
CCATCCTCTT TATACCTGTC GCTGGTACAG GAATATGAAC AACCGGAGCT GGTCTCGGCA
GAAGAAGAGA ATAAGAACAG TCTGATTGAT GAGCTGCAGG CTGGGAAACC CAGTATTTTA
CTGGTTGAGG ATGAACCGGA ACTGCGTTAT CTGATCCGTA ATGTACTGAA AGAACAATAT
GTGGTTTATG AAGCGGGTAC GGGTGTGGAG GCGCTTGCCT TTTTATATAA AACACTTCCG
GACCTGATCA TCAGCGATGT GATGATGCCT GATATGAACG GACTGGAATT GTGCCGTACG
GTTAAGCAAA CGCCTGCTAT GGCACAGATC CCCTTTGTAA TTTTATCGGC GAGGGGTTCT
GAAGACAATA AGGCCGAAGG TTATGAGCTT GGTGCCGATG CCTACATTCC AAAACCATTC
CAGATCAATT ATCTGCTTGT GAGGATCCGG AAGCTCCTGG ACGATCAGGC GCGGATGGAA
AGCCTGATCA AGGACCAGCA CATTACCAAT CAGTTTATGG ATGCAGATAT TGCAGAAACG
GATAAGAAAT TTCTGGAAGG ATTGTTGAAG GTGATTGAAA ATAATTTAAA CGAACCCGAA
CTAAATGCCG CTACACTGGA GAATGCACTT TCGATCAGCA AAATGCAGTT GTACAGAAGG
CTCAAATCGC TGGCAGGCAT GACCCCTGCC GAATTTATCA AAAGGATAAG GCTGAAACAT
GCGGCAGACA TGCTGATCGC ATCACAGTAT ACGGTTTCTG AGATATTTTA CCGTACCGGA
TTTAACAACA AATCTTACTT CTTCAGGGAG TTTAAAAAGA TTTACCGTTG TGCCCCAAAT
GAGTACAGGC AGCAGCAATA TGCTGAAAAC ACCCCTTCTT TGTAA
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| Protein sequence | MKGLFKFYFS VVLICFSKFS SAITGGDPVE FYFQQYDNRN GLSNSAVNIV FQDKDQLLWV
GTWDGLNMYD GTDFRVFNYN SENQGRSIGN NVIQDIKEDR AGNIWISTIG GITRFEKPSG
KFYRYFYNQA TKRSIAEKEY ELAVTEEGIV FCYSKTYGLS RFDFQSNQFK QIPFPGLKVK
ALKMESGRGG LMWFLKNDGT LLACKVTAAG LSPYRIIKLP SQVNNFFTAN QRMLFTDTDN
NLWTVDNGFQ PKKIKNIAAV KSVIYYHSHY IVAFDGQGIG VYNDDFESSS FMQEEVKQLA
NTRVTTLEPA KDSVLWVGTD GNGLIKIYPK VNHFGLVNWT NFADLNKPVR AFAATDGNLW
VGTKGKGIVI LKDFNGSFAV QQLKEGLSTA NGLDNNSVYA LKRGRAPYIY IGTDGQGLGI
YDLRAKKVIR WQELAGTAEL PAFGSVYAIL EDRDSSLWLG TSGNGLIHLK LTRNTSGMLS
VSDFKQYLSG KQNGPANDII YALSNGDDER LWIACRYGGL SVLDKRTGRF KTFKAFSYPN
SLSNNDVLSL YKDSRKRLWI GTSYGLNMLS EEESVKDSPV FKKFTMNDGL PNNTIHAIEA
ANSGNIWVST NKGLARLNPV DGAIASFRES DGLQSNEFSD GAVWKSASGK LYFGGIYGFN
YFIPENITGN KLQPNLLVSG IQLGGKNLDE NRLQVLNTVQ AEIPEYTVPR KSNFFQLSLK
PMSFLNEAKN EFAYKLDGLD KNWNYSGGVG NIVYNNVPPG NYTMRVRWSN GEGVWTDGVG
VFKLQVEQYF WLSYPALFTY FIIVVASGYA FHLYRKNKLQ MKYQLQMEHL LRQKDEAVHQ
QRLNFFTNIA HEIQTPLTMI MGSVEHYLRS KKSELLKNKE NNYFISIVHQ HTARLTYLVQ
QLLEFRKAEA GYLKRNDDYV DISKMLESLS ELFVPASRKN SQQYLRTIQS GIAGFIDKDK
FEKILFNLLS NAFKHSGPQE TVVFKAGYHQ EAELLEVSVS NSGCTLKQEH LEQIFNKFYV
SNEQQTEKFS TGIGLAFTKE LVTLMDADIK VSLQEGWIDF MVKVQLPTSE GKDAKVITSA
PSSLYLSLVQ EYEQPELVSA EEENKNSLID ELQAGKPSIL LVEDEPELRY LIRNVLKEQY
VVYEAGTGVE ALAFLYKTLP DLIISDVMMP DMNGLELCRT VKQTPAMAQI PFVILSARGS
EDNKAEGYEL GADAYIPKPF QINYLLVRIR KLLDDQARME SLIKDQHITN QFMDADIAET
DKKFLEGLLK VIENNLNEPE LNAATLENAL SISKMQLYRR LKSLAGMTPA EFIKRIRLKH
AADMLIASQY TVSEIFYRTG FNNKSYFFRE FKKIYRCAPN EYRQQQYAEN TPSL
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