| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3886 |
|---|
| Symbol | |
|---|
| ID | 8255020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4673825 |
|---|
| End bp | 4676785 |
|---|
| Gene Length | 2961 bp |
|---|
| Protein Length | 986 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644937550 |
|---|
| Product | glycoside hydrolase family 2 sugar binding |
|---|
| Protein accession | YP_003094139 |
|---|
| Protein GI | 255533767 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.754835 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAG GAAGAAGGAA TTTTATAAAG ATCAGTTCTA TTGGCGCCTT AAATTTATCC
CTGTTCAGTG TGGATGGGTT AGCAACGATA CCCGACCTCT CTCCACTGGA AAAAAACTTT
ATCCATCCGC CAGATGCGTC AAAATCATCC TGTTACTGGT GGTGGTTTAA CGGGTTGGTA
GATGAAGCGG GCATTACCCG CGATATGGAA GAATTCAGGG CGAAGGGCAT GGGTGAGGTA
CTGCTGGTAA ATTCTGCTGG CGGGCTTGGT GGCGTGCCCT ATCCGCAGGG TGCAAAGTTC
ATGTCGGAAG AATGGAAAGC CTTATACCGG CATGCCATGA AAGAAGCCAA AAGGGTCGGC
ATAGCCGTAG GGATCAATAT GAGCTCGGGC TGGTGTATGG GCGGGCCCTG GATTGAACCT
GAAAATTCCG GACGCTGGTA CCTGCAGTCG GAACTGGCCC TGAGTGGTCC CAGGAAGTTT
TCCGGCACCT TGCCTTTGCC AGGCAACAGG GTAGGCTACG ATAAGGTATT TAACCCACCT
GGCTATAAGG AATACATAGA CCTGCCTCTG GAGCAGCTGG ACTACCAGGA TACCGCCATC
GTTGCCATTC CTGATAACGG AATGCCTGAT ATGCGCATCA GCGGAACGCG TGCAGAAGTA
CTTGCAGCTA AAATCAATCA TAAAGACCTG AGCAATTTTG CCAAGGCAAA TGAAGTAATG
GGCCCGGTAA GGCAGGCCTG GGAAAATGAT CCGGCCGATC AGCCTGTCCC TGTCGACCAG
GTGATCAACC TGACAGATAA AGTAGGTAAA GACGGGCATC TTGACTGGGA GGTGCCAGCC
GGTAAATGGA AAATTATCCG TACCGGGCAC CGCATGACAG GCTCGAAGTT AATGATTGCC
CAGCCCGAAG CAGATGGTTT GTCGGTCGAC TGGTTTGACC GTAAAGGCGT AGAGATCCAG
TTCGAAAAGC TGGGCAAAAT GTTTATTGAA GAAGCTGCAA AAGTTGGGAA TAAACCCAAA
TATTTCTGTG ACGATAGTTT TGAAGATGGC TTCCCCAACT GGACCGCAAA AATTATTGAA
CACTTTAAGC ATTACCGGGG TTATGATCCT ACACCCTACC TGCCTGCACT TTCAGGTTAC
CTGATCGGCA GTGCAGAAAT AGCCGACCGC TTTTTGCACG ATTACAGGAA AACCCTGGCA
GATTGTATGG CTGATGAACA TTATAAACGT TTTGCAGAAC TCTGTCACGG GCAGGGTATA
TTGGTCCAGA ATGAATCTGC AGGGCCAAGC CGCTCAGGTA CCATCTGTCT GGACGGGCTC
AAAAATCTTG GGCGCAGCGA TTTCCCTATG GGTGAATTCT GGCTCGGCCC TAAGCACGAG
GATGAAAGCA CACTGGCAGA CGACCAGTCT TATGGCGTTT CAAGGCTGGA TTATGGTCAG
AATAAAGTAA CCAAAATGGT GGCTTCGGCA GCACATATTT ATGGACGTGA GACCGCCTCA
GCAGAGGCGT TTACCACCAT GCGGCATTGG CTCGATTATC CGGGCTCGTT GAAGCAGGCC
CTTGACCGGG CCTTTTGTGA AGGCATAAAC CGCATTGCCA TCCATACCTC AACCGCTTCC
CGGCCCAAAG ATGGTAAGCC CGGATATGAG TATGGCGCAG GTACACATTT TAACCCTAAT
GTAACCTGGT GGGAAAAATC AGGGCCCTTT TTTGATTATG TTGCACGTTC ACAATACCTG
CTGCGTTCGG GTAAATTTGT TGCCGATGTG CTGTATTATA ATGGCGACGG GGCACCCAAC
CTGGTCGCAC AAAAACACAT CGACCCTTTG CTGGGTAAAG GTTATGATTA TGATGTTTGC
AATGAAGAAG TCCTTCTCAC CCGTGTAAGC GTTAAAAACG GTAGGATTAC CCTGCCAGAT
GGAATGAATT ACCGCATTTT GGTATTGCCG GATACTGAAA GGATGCCTTT GGCAGTCATC
ACTAAGGTCA GCGAGCTGGT TGCAGCCGGC GCAACAGTTG TTGGCCATCT GCCGGTTAAA
GACTCAGGGC TTAAAAACTA TCCTGAATGT GATGCCAAAG TACAGGAGAT TGCCAGGGAA
TTGCAGGGAA AGGTCTTAGC TAAAGCAGCT ATCCGTAATG TTTTGATGAA CAAAGGGATA
AAGCCAGACT TTGAATATAC AGGTAACGCT GGTGAACACA TTGATTTTAT CCACCGCAGT
ACGCCGGAAG CTGAAATCTA TTTCATCACT AACAGACATG GCACTAGCGT CAGTTCTACC
TGTACCTTCA GGGTAAAAAA CCGGCTTCCC GAAATCTGGG ATCCTGTTAA AGGCGCAGTG
ATAAAAAGGG TCAATTTCCG GGAAGCCGGT GATCGTGTAG AAATACCTTT AAAATTTGAG
GCATTTCAAT CCTGGTTCAT CGTCTTTCCA AAAAACAGTT CCTCCGTTAA AACTACTGCT
GCCAATTATC CGGAATTAAC AAGCGGACTG GAACTGACAG GTGCCTGGCA GGTGGCCTTT
GATGAAAACT GGGGCGGCCC TAAAGCTGTT GAATTTGCCA GTCTGCTGGA TTGGAGCCAG
CATGCTGACG AAAGGATCAG GTATTTTTCC GGTAAGGCCG TTTACACCAA AACATTCAGT
TACGATAAGC CATTGTCGAA AGATAAACCC GTATACCTGG ATCTGGGTAC AGTGAAAAAC
ATAGCCGAAG TAAGCCTGAA TGGTAAAAAC CTGGGCGTGG TGTGGACTGC ACCCTGGCAT
GTCGACATTT CCCCGGCCTT AAAGACCGGT CAGAACAGGC TGCAGATAGA AGTGATCAAC
CTATGGCCCA ACAGGCTGAT TGGAGATGCC GCTTTACCGA AAGAGAAGCG CATCACCAAT
ACAAACATTG TTTTTAAGAA AGAAGATAAA TTATTGTCAT CCGGATTATT GGGCCCTGTA
ATTATAAAAG TTACAAAATA A
|
|---|
| Protein sequence | MKLGRRNFIK ISSIGALNLS LFSVDGLATI PDLSPLEKNF IHPPDASKSS CYWWWFNGLV
DEAGITRDME EFRAKGMGEV LLVNSAGGLG GVPYPQGAKF MSEEWKALYR HAMKEAKRVG
IAVGINMSSG WCMGGPWIEP ENSGRWYLQS ELALSGPRKF SGTLPLPGNR VGYDKVFNPP
GYKEYIDLPL EQLDYQDTAI VAIPDNGMPD MRISGTRAEV LAAKINHKDL SNFAKANEVM
GPVRQAWEND PADQPVPVDQ VINLTDKVGK DGHLDWEVPA GKWKIIRTGH RMTGSKLMIA
QPEADGLSVD WFDRKGVEIQ FEKLGKMFIE EAAKVGNKPK YFCDDSFEDG FPNWTAKIIE
HFKHYRGYDP TPYLPALSGY LIGSAEIADR FLHDYRKTLA DCMADEHYKR FAELCHGQGI
LVQNESAGPS RSGTICLDGL KNLGRSDFPM GEFWLGPKHE DESTLADDQS YGVSRLDYGQ
NKVTKMVASA AHIYGRETAS AEAFTTMRHW LDYPGSLKQA LDRAFCEGIN RIAIHTSTAS
RPKDGKPGYE YGAGTHFNPN VTWWEKSGPF FDYVARSQYL LRSGKFVADV LYYNGDGAPN
LVAQKHIDPL LGKGYDYDVC NEEVLLTRVS VKNGRITLPD GMNYRILVLP DTERMPLAVI
TKVSELVAAG ATVVGHLPVK DSGLKNYPEC DAKVQEIARE LQGKVLAKAA IRNVLMNKGI
KPDFEYTGNA GEHIDFIHRS TPEAEIYFIT NRHGTSVSST CTFRVKNRLP EIWDPVKGAV
IKRVNFREAG DRVEIPLKFE AFQSWFIVFP KNSSSVKTTA ANYPELTSGL ELTGAWQVAF
DENWGGPKAV EFASLLDWSQ HADERIRYFS GKAVYTKTFS YDKPLSKDKP VYLDLGTVKN
IAEVSLNGKN LGVVWTAPWH VDISPALKTG QNRLQIEVIN LWPNRLIGDA ALPKEKRITN
TNIVFKKEDK LLSSGLLGPV IIKVTK
|
|---|
| |