| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3867 |
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| Symbol | |
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| ID | 8255001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4641874 |
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| End bp | 4645224 |
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| Gene Length | 3351 bp |
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| Protein Length | 1116 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644937531 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003094120 |
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| Protein GI | 255533748 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.409704 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAT TATTTGTAAA TGTTTGGGAA GAACAGGTCA GTATCCCTAC ATATCCAACG
GGTAAGCCGG AAAAAAATCC AATGTTTTTT GAAAAGCGGA TTTATCAGGG CAGCAGTGGT
GTTGTTTATC CAAACCCGGT GATCGAAAAA ATCTATGATG ACAAAGAAGA TAAAAGTTAT
ACTGCCCTCT ACCTGGAAAA TAAATACCTG AAAATCATGA TCCTTCCTGA ATTAGGTGGA
AGGGTACATA TGGCCTATGA TAAGATAAAG CAGCGTCATT TTATTTATTA TAACCAAGTG
ATCAAACCTG CACTTGTTGG TCTTTGCGGG CCCTGGATAT CGGGCGGAAT AGAGTTTAAC
TGGCCTCAAC ATCATCGTCC GAGTACATTT GAGCCTGTTG ATTATGCCAT TGAAGAAAAT
GCGGATGGAA GTAAAACGGT ATGGGTTAAT GAGGTAGAGA AAATGTTCCT TACCAAGGGG
ATGGCAGGTT TTACCCTACA TCCTGATAAA GCCTACCTCG AAATTAAAGG GAAACTGTAT
AACCGGACCA GTCTGCCGCA AACATTTTTA TGGTGGGCAA ACCCTGCGGT AAAGGTAAAC
GACGATTATC AGTCGGTTTT TCCGCCTGAT GTAAACGCTG TTTTTGACCA TGGTAAACGT
GACGTTTCTA CCTTTCCAAT AGCAACGGGT ACTTATTATA AAGTTGATTA CGCCCCCGGA
ACAGATATCT CCAGATACAG GAATATTCCG GTACCTACTT CTTATATGGC CATCCGTTCC
GATTATGATT TTGTGGGTGG TTATGAAAAT GATACCGAAG CAGGGCTGTT ACATGTGGCC
AGCCACCACA TCTCGCCGGG TAAAAAACAG TGGACCTGGG GCAATAGTGA CTTTGGGAAA
GCCTGGGACA GGAACCTTAC TGATGAGGAC GGGCCCTACA TAGAGCTGAT GACCGGTGTT
TATACCGATA ACCAGCCCGA TTTCTCCTGG CTGATGCCTT ATGAAGAAAA ATCTTTTGTA
CAATATTTTA TGCCTTACCG CGAACTTGGG GTGGTAAAGA ATGCCAATAA GGATATTTTA
CTCAATTTAA CCCGGACCGG GAAAAAAGCC AGGCTGCAAA TTTTTGCAAC ATCTGTACAG
CGTGAAAATA AGGTTAGCTT GTCTGTTAAA GGTGAAGTGG TTTATTCAGT GGTATTTGAT
GTCAGCCCGG AAAGTACATT TGAAAAAGAA ATTGCCCTCC CAACCCAACT GGAGGAAACC
GATATTTTGC TGGTGATCAC AAATGCCTCA GGAAAAATCC TGCTGAAGTA CGAACCGGCT
GCCGATCAGA AAAATGAAAT TCCTGAGCCT GCAAAAGCAG CGCTGCCACC ACAGGAAGTA
GAAAATAACG AACAGCTTTT TCTTACAGGA CTGCACCTGG AACAATACCG GCATGCCACT
TATAATCCTG TTGATTATTA TGAAGAGGCC TTACGCCGCG ATGATAAGGA TGTGCGGGTG
AACAATGCGA TGGGAAAATG GTATTTGAGA AGGGGACAGT TAAATAAAAG TGAACCTTAT
CTGCGCAAAG CTGTTGAGAC CCTGGTTTCA CGTAACCCCA ATCCTTATGA CGGAGAACCT
TACTACAATC TGGGGCTTTG TTTAAAGCTT CAGGGCAAAT ACGATGAAGC TTACGATCAC
TTTTATAAAT CGGCATGGAA CAATGCATGG CAGGATAGTG CCTATTTTTC ACTGGCATTG
ATCGATGCCG CCCGTGGTGA TTTTGAACAG GCCCTGCAGC ACATTGAATG GTCGATAGAC
CGTAATGCAA GGAACAATAA GGCCCGGGCC TTAAAAGTGA TGGTGCTCAG AAAAATGGAC
CGGCTGGATG AAGCTGCCAT AGCTGCTGAG ACTGCTATAG AACGTGATCT TTTTAACCTG
AACATCTATT TTGAACAGTC TAAAATATAT AAGGGTAAAG GGCAGGAAGA AAAGGCTTTA
AAGGCATTAA ATGTACTGTT TAGATTGTCC AGACAAAATG TGCACAGCTA TATTACCTAC
GCGCTTGACT ACGCTGCGGC AAACCAATAC AGTGAAGCCA TAGAAATGAT GAGTTTTGCA
TTGGACCAAA GTGATACCGA TACCTATCCG ATGGTATTTT ATTACCTGGG CTGGTTTAAT
GTACAAATGG GCCAGGAGCA AAAGGCTTTA TCACTTTTTA AGAAAGCGGC CCTGGCCAAT
TCTGATTATT GTTTCCCCAA CCGGATAGAA GATGTAGCCG TGTTGCGTTC GGCAATGAGC
AGGAATGAAA ATGATGGCAA AGCACCTTAT TACCTTGGTA ATTTATGGTA TGATAAACGA
CAATACGATG AGGCCATTAA GATGTGGGAA TCTTCCATAG AGAGAGAGGA TACTTTTCCG
GCAACCTGGC GCAATTTGGG GATTGCCTAT TTTAACAAAA GAAATGATGC CGGTAAAGCC
CTGGAATGTT TTCAAAAGGC TTTTACACTT GATCAGACAG ATGCCCGTAT TTTTATGGAG
CTTGATCAGC TGTATAAAAG ATTGAATACC CCGGCAAGTG AACGTCTGAA TTTACTTGAA
GCACATCCTG CTCTGGTAGC ATTAAGAGAC GACGTTTACC TTGAACAGAT TGCTTTATAT
AATTTTACAG GTAGGTACGA AAAAGCCTAT GCAATGATCA TGTCCCGGCA GTTTCACCCT
TGGGAAGGCG GAGAGGGTAA GGTTTCGGGC CAGTACCTCT ACAGCCTGAC AGAGATGGCC
AAGCAACACA TACAGGATCA GGAATATCAG CTGGCTGTTG ACAAATTACA GATGGTACGG
GAATATCCGC ATAACCTGGG CGAAGGTAAG CTTTACGGTA TACAGGAAAA CGATATTTTT
TACTGGCTGG GTTGTGCATA CGATGGGTTA GGACAAAAAG ATATTGCCCG CGAACACTAT
CATATTGCCG TAAAGGGCCT GTCAGAACCA TCAGCGGCTA TGTTTTATAA TGATCAGCAA
CCCGACAAAA TTTTTTACCA GGGGTTGGCC TGGATGAGGC TCAATGCACC CGAAAAGGCA
AAAATGATCT TTGAAAACCT GATCAGCTAT GGAAGGGCAC ACTTAAATGA TGTTGTTAAA
ATAGATTATT TTGCGGTATC ACTGCCTGAT CTCCTTATTT TCGAAGATAA CCTGGATATA
CGGAACAAGA CGCACTGTCA TTACCTGATC GGTTTAGGTT TATTGGGCCT GAAGGAGCTG
AGCAATGCCA AAAAGGAATT TGAACTTGCT TTAAAAAATG ATGCTATGCA CTTTGGTGCA
AGCGTACACC TGCGGGCTGC AGGCTATAAA GATGAACCCG CGTTAATTTA A
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| Protein sequence | MSELFVNVWE EQVSIPTYPT GKPEKNPMFF EKRIYQGSSG VVYPNPVIEK IYDDKEDKSY
TALYLENKYL KIMILPELGG RVHMAYDKIK QRHFIYYNQV IKPALVGLCG PWISGGIEFN
WPQHHRPSTF EPVDYAIEEN ADGSKTVWVN EVEKMFLTKG MAGFTLHPDK AYLEIKGKLY
NRTSLPQTFL WWANPAVKVN DDYQSVFPPD VNAVFDHGKR DVSTFPIATG TYYKVDYAPG
TDISRYRNIP VPTSYMAIRS DYDFVGGYEN DTEAGLLHVA SHHISPGKKQ WTWGNSDFGK
AWDRNLTDED GPYIELMTGV YTDNQPDFSW LMPYEEKSFV QYFMPYRELG VVKNANKDIL
LNLTRTGKKA RLQIFATSVQ RENKVSLSVK GEVVYSVVFD VSPESTFEKE IALPTQLEET
DILLVITNAS GKILLKYEPA ADQKNEIPEP AKAALPPQEV ENNEQLFLTG LHLEQYRHAT
YNPVDYYEEA LRRDDKDVRV NNAMGKWYLR RGQLNKSEPY LRKAVETLVS RNPNPYDGEP
YYNLGLCLKL QGKYDEAYDH FYKSAWNNAW QDSAYFSLAL IDAARGDFEQ ALQHIEWSID
RNARNNKARA LKVMVLRKMD RLDEAAIAAE TAIERDLFNL NIYFEQSKIY KGKGQEEKAL
KALNVLFRLS RQNVHSYITY ALDYAAANQY SEAIEMMSFA LDQSDTDTYP MVFYYLGWFN
VQMGQEQKAL SLFKKAALAN SDYCFPNRIE DVAVLRSAMS RNENDGKAPY YLGNLWYDKR
QYDEAIKMWE SSIEREDTFP ATWRNLGIAY FNKRNDAGKA LECFQKAFTL DQTDARIFME
LDQLYKRLNT PASERLNLLE AHPALVALRD DVYLEQIALY NFTGRYEKAY AMIMSRQFHP
WEGGEGKVSG QYLYSLTEMA KQHIQDQEYQ LAVDKLQMVR EYPHNLGEGK LYGIQENDIF
YWLGCAYDGL GQKDIAREHY HIAVKGLSEP SAAMFYNDQQ PDKIFYQGLA WMRLNAPEKA
KMIFENLISY GRAHLNDVVK IDYFAVSLPD LLIFEDNLDI RNKTHCHYLI GLGLLGLKEL
SNAKKEFELA LKNDAMHFGA SVHLRAAGYK DEPALI
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