| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3773 |
|---|
| Symbol | |
|---|
| ID | 8254905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4520732 |
|---|
| End bp | 4524094 |
|---|
| Gene Length | 3363 bp |
|---|
| Protein Length | 1120 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644937435 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003094026 |
|---|
| Protein GI | 255533654 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.466105 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGTGA TTTTTAAATT CATTCGAGGA AGTGAGTATA AGACTTTTTT GCGCTATATC
TCATTTTGTT TCGTATTGCT GTCCTCGATA TGTCTGCGGG CCGGGGCACA GGAGCGTGCT
CTAGAAGGGC GCGTGTATGA TGAAGAAGGA AAAGTGCCGA TGGCCGGAGT AACTGTTAAG
GTCAAAGGAA AAAGCAATTC AACAGTAACC AATCAAAAAG GTGGTTTTTT AATTAAAGTT
AGCCCCTCAG ATACACTGCT GGTGGCTTAT GTGGGCTATA CAAGAATCCA GCGCATATAC
TCAGGTGAGA AAACCATTGA TTTTGTCCTG AAGGAAGAAA AATTAATGAT GGATGAGGTG
GTAGTGGTAG GCTATGGCGT GTTGAAGAAA AAGGCTGTCG TAGGTGCTGT GTCAGAAATT
AGCGGTGATG ACATTAAGGA CAGGCCCACA CCGAATATAA CCAGGGCATT ACAGGGGCAG
GTGCCGGGCT TAAACATTAT CCAGGCCGAT GGGAAGCCCA ATCACGGAGG GAACCTGACG
ATACGTGGTC AGAACAACAG CTTTAAAGCA AGGAAAGTTG GGGGTGGGGA ATACAGCAAC
AGCTTAGGAC AAGGTGGAGG TGCTTTGGTA TTGATCGATG GTGCCGAAGG AGACATCAAT
ACCGTAAATC CTGAAGATAT TGCCAGTGTA AGTGTTTTAA AAGATGCTTC TTCGGCTGCC
GTTTATGGCG CAAGGGGAGC TTTCGGCGTG ATATTGATCA CTACTAAAAA ACCTAAAGGT
AATGCGCCAA AGATATCTTA TAGTTATGCC CGCTCTATTA TGGAAAGGAC AGTGCTGTGG
GAAGACCATA TTGTTTCAGA TCCGGTAGCC TGGGTAGACG GTTTTAGGGA GGCCTATTTG
AATGCCATGC CAAATGGTAC CGTGCCCTCA TTGATGAACA ATTACTTTCC TTATTCGGAC
AGCTGGTTTC AGGAATTAAA ACGCAGGCAG GCTGATCCGA CTTTAGATGA TTATAATATT
GATGCCAATG GAAATTACGT TTACTATGGT TCAACCAATT GGTTAGCAGA GTTCTATAAA
AGAAGCAACA GCGCTAACGT ACATTCCCTT AATTTTTCAG GAGGTAATGA ATCTTCCAGT
TATTACTTAT CAGGCCGGGC TTACGAGCAG GATGGTATTT ATAAAGTAGG AAATGAAGAT
TTTAATAAAT ACAACCTTCG CGGTAAGGGG AGTTTAAAAT TAAAGCCCTG GTTAACTTTA
GACAACAATA CCAGTCTAAA CATTAACAAC TATTTGCAAC CCATGATGCA TTACGGGCAG
AACGTAGTTG GCCGTCAGAT TGATTTATTT GGTTTTCCGG TAGCTACGAT TAAAAACCCG
GATGACAGCT GGACACAAAC TGCCGCCAAA GTAGGTTATG CGGCCTTTGC TGAAGGAACA
TCTTTTCAGG ACAACAAGTC CATGGAAATC GCCAATACCA CTTCGCTGTT GGTAGATATC
ATCCCCAGTG TTTTTAATGT AAGGGGCGAC TTTACCTATA AGGCAATCCG TGCGCAAAGA
CAGCGTTCGG AAAACCTATA TACTTTTTAT ACCGGATTAA ATGCTTCGGG AAAAGATTAT
AACGATTCAT CATTTGAAGA CTGGAGATAC GATACAGACT ATATATCTGC AAATATGGTG
GGTACCTATA CGCCGAAACT TGCTGATGGT CACAATTTGA ACATCATTGC GGGATGGAAC
CTGGAAGACA GTCGGTATAA AACCCAAAAG ACTTACAGGA CGGGGAACCT TTATCCTTCA
AAGCCAGGCT TTACATTGAT GGACGGAGAG TATTATTCCA CTTTATCAGG GGGCAATTCA
TGGGGCCTGA TCGGGGCATT TAGCCGCATC AATTATAATT ATAAGAACAG GTACCTATCT
GAAATTTCTG TCAGGTACGA TGGCTCTTCC AAATTTCCTA AAGATTCTCA ATGGGGATTT
TTCCCTTCTG CATCGTTAGG ATGGAATGTT TCTGAGGAAT CATTTGTAAA AAAAGCAACT
GGTAACTGGT TGAACAATTT GAAGATCAGG GCCAGTGTAG GCTCTTTGGG GAATGCAAAC
ATCAGTCCTT ATCAGTTTTT AGAGACGATG TCTTTCAGTA AGACTTCAGT GCTCATCAAT
GGAAACCGTG TACCTTATAC GGAAGCTCCA TCACTTATTC CTGACGGAAT TACCTGGGAA
AAGGTGACTA CTTATAACCT GGGCCTCGAC CTGGCGGTGC TGAACAACAG GTTGAATTTT
GTTGGCGATA TTTATAGCAG GTATACGGAT GACCTTTATA CCGTAGGGCC TAACCTGCCA
CAGGTTCTTG GAAGTTCGGC CCCGAAAGGG AACTTCGCAA GTTTAAAAAC TACGGGCTGG
GAAGCCAGTC TGACCTGGAA GGATAATTTT GAAGTGCGCC AGTCGCCGTT TAATTACAGT
GTAAAAGCAA TGTTGTGGGA CAGTCGCAGT TGGGTGACCG ATTATTACAA TGCCAATGGT
GACCTGACCA CCTACTATGA AGGAATGGAA CTCGGTGAGA TGTGGGGTTT CAGAACTGCC
GGTATTTATG CCAGCAATGC GGAAGCGAAA AACGGACCTG CTTACAATTT CTTTAAGAAC
GGTGAAATGT TTGAAGCTTA TGCGGGAGAT TTAAGATTTG TAGACATTGA TGGAGACGGG
ATCATGACCA AAGGCGACCG CACGTTGAGC AGCCATGGTG ATATGGAAAT TATTGGCAAT
ACCTCTTCAA GATACCAGTT TGGATTTAAT CTTTCCGCCA ATTGGAAAGG GTTCGGACTG
TCGGCATTTT TCCAGGGTGT ATTGAAAAAA CAATGGTATC CCTGGACAGA GTCTGGGTTT
TTCTGGGGGC AGCATAACCG CGCTTATGGC TTCCTGATGG AATCGCAAAC CGGTGACCAT
ATTGTTCAGG TGGATAAATC CAATGACAAC TGGGTAGTAA CCAATATGGA TAAAGATCCG
TACTGGACAA GAAGGATCTC TTTAGTAGCC AACAGAAACG ATGGCCCCTT AACATGGGAA
AATACGCATT ACCTGCAGGA TGCATCTTAT ATCAGGCTTA AAAATATCAC TGTTGATTAT
AATTTACCAA CTTCTGTTGT GAAGAAAGTA GGAATGAGCG GATGCCGGAT CTATGTAAGC
GCAGAAAACA TGTGGACCTA TTCACCGATG TACAAATACA CTAAAATGTT TGATCCGGAG
GTAATCGATT CAGGCGATAG TGATTTTGCC AGTTCAACAT CATCGGGTTT AGGGGGGACG
GGAAACGGTT ATTCCTATCC AATGCTCAAA AACATCACGG TGGGCGTAAA TATTAATTTT
TAA
|
|---|
| Protein sequence | MEVIFKFIRG SEYKTFLRYI SFCFVLLSSI CLRAGAQERA LEGRVYDEEG KVPMAGVTVK
VKGKSNSTVT NQKGGFLIKV SPSDTLLVAY VGYTRIQRIY SGEKTIDFVL KEEKLMMDEV
VVVGYGVLKK KAVVGAVSEI SGDDIKDRPT PNITRALQGQ VPGLNIIQAD GKPNHGGNLT
IRGQNNSFKA RKVGGGEYSN SLGQGGGALV LIDGAEGDIN TVNPEDIASV SVLKDASSAA
VYGARGAFGV ILITTKKPKG NAPKISYSYA RSIMERTVLW EDHIVSDPVA WVDGFREAYL
NAMPNGTVPS LMNNYFPYSD SWFQELKRRQ ADPTLDDYNI DANGNYVYYG STNWLAEFYK
RSNSANVHSL NFSGGNESSS YYLSGRAYEQ DGIYKVGNED FNKYNLRGKG SLKLKPWLTL
DNNTSLNINN YLQPMMHYGQ NVVGRQIDLF GFPVATIKNP DDSWTQTAAK VGYAAFAEGT
SFQDNKSMEI ANTTSLLVDI IPSVFNVRGD FTYKAIRAQR QRSENLYTFY TGLNASGKDY
NDSSFEDWRY DTDYISANMV GTYTPKLADG HNLNIIAGWN LEDSRYKTQK TYRTGNLYPS
KPGFTLMDGE YYSTLSGGNS WGLIGAFSRI NYNYKNRYLS EISVRYDGSS KFPKDSQWGF
FPSASLGWNV SEESFVKKAT GNWLNNLKIR ASVGSLGNAN ISPYQFLETM SFSKTSVLIN
GNRVPYTEAP SLIPDGITWE KVTTYNLGLD LAVLNNRLNF VGDIYSRYTD DLYTVGPNLP
QVLGSSAPKG NFASLKTTGW EASLTWKDNF EVRQSPFNYS VKAMLWDSRS WVTDYYNANG
DLTTYYEGME LGEMWGFRTA GIYASNAEAK NGPAYNFFKN GEMFEAYAGD LRFVDIDGDG
IMTKGDRTLS SHGDMEIIGN TSSRYQFGFN LSANWKGFGL SAFFQGVLKK QWYPWTESGF
FWGQHNRAYG FLMESQTGDH IVQVDKSNDN WVVTNMDKDP YWTRRISLVA NRNDGPLTWE
NTHYLQDASY IRLKNITVDY NLPTSVVKKV GMSGCRIYVS AENMWTYSPM YKYTKMFDPE
VIDSGDSDFA SSTSSGLGGT GNGYSYPMLK NITVGVNINF
|
|---|
| |