| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3767 |
|---|
| Symbol | |
|---|
| ID | 8254899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4512911 |
|---|
| End bp | 4513942 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644937429 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_003094020 |
|---|
| Protein GI | 255533648 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0706737 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAT TCGGGTATAA AGTATGGTCC ACTTTAGGCT TATCTCTGTT TCTTGTTGTA
GGGTGTTTGC CTAAAGAAGA TAGATTAAAC AACAAAAAAA AGGAAGGAAA GGAGGTGGTT
AAAGGCTATA CTTCTAAAAA GGATCTCTCG GCAGTAAAAG TGGGTTACAG CGGTCCCTCG
ATGGTTGCCC CCTATTATGT GGCATTGGAA GATGTAGTGA AGCGAAGTGT GCAGCGATAT
GGAATGCAAT ATTATACGGC CGATGGGCAG GAAGATGTAG CTAAGCAGGT TGCTGCTATA
GAAGACCTGT TGTCTAAAGG CATACAGGTG CTGGTGCTAA ACCCGCTGGA CCCAAAGGCT
GTGGTGCCGG TTGTAAACAG GGCAATTGCT GAAGGGGTGG TCGTGTTTAT TGTAGATTCA
ATGATTGATG AAAAAGCCGC TTATACCTCA TCAGTTGTGG CTAATAATAC TTTAAATGGG
GAGTTGCTGG GGCTTTGGCT GGCAGAGACA AAGAACGAGG CCTTAAAGAT CGCGATCATT
AGTGGTAACC AGGGCAATCC CGTGGGACGA GAAAAAAGAC TCGGCTTTGT GAGAGGCCTG
GCAGACGGAC AATTGCGTCA AAATGCGAAA ACCAATTTCG ATATCGTAGC ACAGGGCTGG
GGTGGCTGGA ACAACAACGG GGGACTTAAA GCTATGGAAG ATATCCTGGC CGCACACCCC
TATGTAAATG TTTTACTGGC AGAAAACGAT GCGATGGCCC TGGGTGCCTA CAAAATTATT
AAGCAGATGG GCAAAGAAAA CCAGATCACT ATTTTAGGAT TCGACGGGCA GAAAGAAGCT
TTTGATATGC TCAAAACCGG AAAATTTGAA GCGACTGCAC AAAACAGCCC GAAAATATTG
GGGGAGACGA TCATAGAACT CGTTGCCCGG CATCTTAACG GCGAAAAGGT AAATAAACTG
AATTATACCC CTTCCGTATT GATCAGCAAA AAGAATGTGG ATGAATATTA CGATGCTAAG
GCCTTATTTT AA
|
|---|
| Protein sequence | MMKFGYKVWS TLGLSLFLVV GCLPKEDRLN NKKKEGKEVV KGYTSKKDLS AVKVGYSGPS
MVAPYYVALE DVVKRSVQRY GMQYYTADGQ EDVAKQVAAI EDLLSKGIQV LVLNPLDPKA
VVPVVNRAIA EGVVVFIVDS MIDEKAAYTS SVVANNTLNG ELLGLWLAET KNEALKIAII
SGNQGNPVGR EKRLGFVRGL ADGQLRQNAK TNFDIVAQGW GGWNNNGGLK AMEDILAAHP
YVNVLLAEND AMALGAYKII KQMGKENQIT ILGFDGQKEA FDMLKTGKFE ATAQNSPKIL
GETIIELVAR HLNGEKVNKL NYTPSVLISK KNVDEYYDAK ALF
|
|---|
| |