Gene Phep_3704 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3704 
Symbol 
ID8254836 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand+ 
Start bp4416429 
End bp4417037 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content36% 
IMG OID644937366 
Productregulatory protein TetR 
Protein accessionYP_003093957 
Protein GI255533585 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.974133 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAATC AGGATAAAAA GAAAGTTTTA ATTATTGAAG CGGCATTAAA ACGGTTTGCT 
CATTATGGAT TGTCTAAAAC AACCATGACG GAAATCGCAA AAGACATATC GTTCTCCAAA 
GCTTTGCTTT ATTACTATTT CCCTGATAAA TTGAGCCTGT ATGTAAGTGC AATAGAACAC 
CTGATGCAGA TCATCAGCAG AGATCTGGTG AAATCTATTG ACAAAACAAG CAGCTCAACA 
GAAGGCATAT TCAAACTGCT GCAAAAAAGA CAATCTTTTA TTCAAAAATA TTACAATCTC 
CTGGAATCTA CGCAACTTAT TGGTAATGAA CTACCTGATG ATCTGTACCA GAAATTCAGT 
AAGGCAAGGG CTTTTGAAGC CATAATTATC AGCTCTTTGT TTAGCCGGGG CGTTACAAGC 
GGAGAGTTTA TAATAGAAGA TCCGAAACTG ACAACAGAAA TATTCATCGA TGCCCTATCT 
GGCATACACT TCAACATCAT GTCTAAAGAC AAGAACATAT TCCCTGTAAA AGAGCAGTTT 
AAACAAATAT TTATCAAGGA AAAACTGTTC GCCGAGATTT TTCTGGAAGG ATTAAGGCCA 
AAAAAATAA
 
Protein sequence
MENQDKKKVL IIEAALKRFA HYGLSKTTMT EIAKDISFSK ALLYYYFPDK LSLYVSAIEH 
LMQIISRDLV KSIDKTSSST EGIFKLLQKR QSFIQKYYNL LESTQLIGNE LPDDLYQKFS 
KARAFEAIII SSLFSRGVTS GEFIIEDPKL TTEIFIDALS GIHFNIMSKD KNIFPVKEQF 
KQIFIKEKLF AEIFLEGLRP KK