| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3657 |
|---|
| Symbol | |
|---|
| ID | 8254788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 4372510 |
|---|
| End bp | 4373319 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644937318 |
|---|
| Product | tRNA pseudouridine synthase A |
|---|
| Protein accession | YP_003093910 |
|---|
| Protein GI | 255533538 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0101] Pseudouridylate synthase |
|---|
| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGGTACT TCGTACACAT CGGTTACAAT GGCTTAAAAT ACAATGGCTG GCAAAAACAG
CCTGGGGTGA TGAACGTGCA GGGTGTGATA GAAAATGCGC TTAGCAAGGT ATTAAAAACC
CCTGTATTTA TCATCGGATG CGGGCGCACG GATGCGCATG TACATGCAAG CCAGTTTTTC
TTCCATATGG ATGTGGAGCA GGACTGGGAT TTTGATCTTG TGTTCAGGAT GAACAAGCTG
CTGCCTGCGG GAATTGCCAT TTTTGAGGTT ATCCAGATGG ATGGTTTGCA GCATGCCCGT
TTTGATGCTG TATTGCGCTC GTACGATTAT TTTATCCATA CCTATAAAGA TCCCTTTTTA
AATGGCCTCA GCTCATTTTA CCTGCTGGAT AAGCTGGACT TTGATAAAAT GAAACAGGCG
GCGGCGATAT TACCGAAATA CAAAGATTTC AGGGCCTTCT GTACCAGTCC GGATAAATAT
GAACATACCC TGTGCAATGT GATGTCGGCC AGTCTTGCTG TAGATGAAAA TGGCGACAAA
CTCCGCTTCC AGATCTCTTC GAACCGTTTT TTGAGTAAAA TGATCCGGAT CATTATGGGA
CAGCTGTTGA AGATTGGGCG TGGGGTATTG AGTGTGGATG AATTTGAACA TTACCTTATT
TACAACCAAA CGCCCGAACT GATTACCCCG GCACATCCAC AAGGGCTGTA TTTATCTAAA
GTTACCTACC CCTACCTGAA TTTGCCACCC CGGACTGAAT TTTCGTCTAT CCTGCAAAAG
CAATCGGACT TATCCTGGCA GCTGCTATAA
|
|---|
| Protein sequence | MRYFVHIGYN GLKYNGWQKQ PGVMNVQGVI ENALSKVLKT PVFIIGCGRT DAHVHASQFF
FHMDVEQDWD FDLVFRMNKL LPAGIAIFEV IQMDGLQHAR FDAVLRSYDY FIHTYKDPFL
NGLSSFYLLD KLDFDKMKQA AAILPKYKDF RAFCTSPDKY EHTLCNVMSA SLAVDENGDK
LRFQISSNRF LSKMIRIIMG QLLKIGRGVL SVDEFEHYLI YNQTPELITP AHPQGLYLSK
VTYPYLNLPP RTEFSSILQK QSDLSWQLL
|
|---|
| |