| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3653 |
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| Symbol | |
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| ID | 8254784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 4366983 |
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| End bp | 4367861 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644937314 |
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| Product | Xylose isomerase domain protein TIM barrel |
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| Protein accession | YP_003093906 |
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| Protein GI | 255533534 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.142923 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTCGA GAAGAACTTT TATTAAACAT GCGGGCCTGG CAGCAGCAGG GGCGGTACTC
CTGCCCTCTT TTGCCTGCAG CGGAGCTGCT GCGGAACAAA AAGTCGGGCT CCAGTTGTAC
ACCCTAAGGG AGCAGATCCC CCATGATGTA AAGGGTGTAA TTGAAAAAAT TGCCCAGGCT
GGCTACAAAG AGGTTGAAAC CTTTGGTTAT TCGGCAAATG CTGGCTATTG GGGCCAGGAT
CCCAAATCCT TTAAAGACCT GCTTAAAGCC AATGGATTAA CCAGTCCGAG CGGGCATTTT
GTGATTGACG ATTTCATCAC CTCTGGCAAT AAGGAATTGT TAAAGCCACT TATAGAAGGT
GCGGCCGCCA TCAACAACCA GTATTTTACT GTCGCCCATA TCGCCGAGCC GATCAGAAAA
ACGCTGGATG ATTACAAAAA AATTACTGCA CGTCTGAACG AGGCCGCAGA GCTGGTGGCA
CAATCGGGCT TAAAACTGGC TTACCATAAC CATGCATTTG AGTTCGATAA GCACGAAGGG
GGAAGTACTG GATACGAGAT CATGCTGAAC GGAACCGATA AAAACCTGAT CAGGTTTGAA
ATGGACCTGT ACTGGGTGGT ACGTTCGGGG AATGATCCTG TTGCGTTGTT TAACAAATAT
CCCGGCCGTT TTGTGATGTG GCATGTGAAA GATATGGACA AAGCCAATCA TGCCATCAAT
ACCGAAGTAG GTACCGGTAC AATTGATTTC AAAAACATTT ATAAGCATGC CAAGCAGGCC
GGACTGGAGC ACCTGATCGT TGAACAGGAA AACTTCTCCA AGGACCCTTA TGTCAGCATC
AAGCAAAGCT TTGATTATGT AAACCAGAAA CTGATTTAG
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| Protein sequence | MNSRRTFIKH AGLAAAGAVL LPSFACSGAA AEQKVGLQLY TLREQIPHDV KGVIEKIAQA
GYKEVETFGY SANAGYWGQD PKSFKDLLKA NGLTSPSGHF VIDDFITSGN KELLKPLIEG
AAAINNQYFT VAHIAEPIRK TLDDYKKITA RLNEAAELVA QSGLKLAYHN HAFEFDKHEG
GSTGYEIMLN GTDKNLIRFE MDLYWVVRSG NDPVALFNKY PGRFVMWHVK DMDKANHAIN
TEVGTGTIDF KNIYKHAKQA GLEHLIVEQE NFSKDPYVSI KQSFDYVNQK LI
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