| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3547 |
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| Symbol | |
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| ID | 8254668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 4220932 |
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| End bp | 4221618 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644937198 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_003093800 |
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| Protein GI | 255533428 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGGGAAT TCAATTTTGT TGAGGGAGAG TTACTGCTCA TCAATAAGCC CTATAAATGG
ACCAGTTTTG ATGTGGTAGG AAAGATCAGG AACTCGCTGA AACCATTAAA GCTAAAGGTA
GGACATGCCG GAACTTTAGA TCCGCTGGCC ACCGGCCTGC TGATCTTATG TACCGGAAAA
CTGACCAAAC AGATCGATAC TTTTCAGGCT GAAGAAAAAG AATATACCGG CACAATGGTG
CTTGGGGCCA CTACCCCATC TTATGATCTG GAAACGGTGG TTGACCAGGA ATTTCCATTG
GATGGGATTA CTGAGGGTGC CATTTATGCT GCCACAGCGC CTTTTATTGG CGACATACAG
CAATACCCGC CTGCCCATTC GGCTGTAAAG GTAAACGGTG AGCGCCTTTA TGTAAAAGCG
CGCAGGGGGG AAGAAACAGA ACTGCGTTTG CGTAACGTTA CAGTATCTGC TTTTGAAATT
ACCCGGATAG CCCTGCCGGA AATCGACTTC AGAATAGTGT GCAGTAAGGG CACCTATATC
AGATCGTTGG TTGCTGACTT TGGGAAACAG CTAAACAATG GCGCCTACCT GTCTAAACTG
GTACGCACGC GCAGCGGAAA CTTTTTATTG GAAAATGCGC TTGAAGTAAA TGATCTTGTT
GATTACCTTA GAGCGAAAAA AGCATAG
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| Protein sequence | MREFNFVEGE LLLINKPYKW TSFDVVGKIR NSLKPLKLKV GHAGTLDPLA TGLLILCTGK
LTKQIDTFQA EEKEYTGTMV LGATTPSYDL ETVVDQEFPL DGITEGAIYA ATAPFIGDIQ
QYPPAHSAVK VNGERLYVKA RRGEETELRL RNVTVSAFEI TRIALPEIDF RIVCSKGTYI
RSLVADFGKQ LNNGAYLSKL VRTRSGNFLL ENALEVNDLV DYLRAKKA
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