| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3450 |
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| Symbol | |
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| ID | 8254570 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4102078 |
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| End bp | 4103658 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644937102 |
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| Product | porphobilinogen deaminase |
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| Protein accession | YP_003093705 |
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| Protein GI | 255533333 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0181] Porphobilinogen deaminase |
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| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.78794 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAAGAC TTATTATAGG TACAAGAGGT AGCGACCTGG CTTTATGGCA AGCCAATTTC
ATTAAAGATA AATTAGCAGC TATCGGTGTT GAAGCTGAAC TGAAGATCAT CAAAACCCAG
GGCGACAAAA TTTTAAATCT GAGGCTCGAC AAGCTTGAAG GTAAGGGGTT TTTTACGAAA
GAACTGGAAG AAGAACTTCT GGGTGGTACC ATCGATATTG CTGTACATTC CCATAAAGAT
TTACCGACGG TACATCCTGC AGGCTTAACC ATTGCTGCGG TAACTGAAAG GGAAGACCCA
TCTGAGCTGT TGCTGATCCT TAAAGATTGT GTCAGCATCA ATCATAAGCT GTCGCTGAAA
AAGGGGGCTA TGGTTGGAAC TTCATCCAAC AGGCGCAAAG CCCAGTTACT GGCGCTTCGG
CCTGATTTAA ATATTGAAGA TTTAAGGGGC AACGTACCTA CCCGCATACA AAAGTTAAGG
GACGAGGATT ACGATGCCAT TCTACTGGCA AGAGCCGGGG TAAACCGTTT GAATATTGAC
CTTTCTGAAT TCCATGTTGA GGTAGTAGAT ACTACTGAAC TGGTTCCAGC TCCTGCACAG
GGCGCGCTTG CCATTCAGAT CAGGGAAAAT GAAAATGAGC TTTTTGATAT TCTGCAGCAA
ATAAACCATT CCGAAACTGC CGAAGAAATA GCCATTGAAC GTAAAGTGCT GAACCTGTTT
GAAGGAGGCT GTCATATGCC TTTAGGCTGT TATTGCAAAA AAGAAGACGG ACAATATGAA
GTCTGGACAT CAAAGGCCGA AACGGATGAA GACTTTCCTG ACCGCTTGTT TTACAGGGTA
GAAAAACTGG ACGGGCTGGC TGAAAAAATT GTTGCCAAAT TTAGTGCTGA CAGGAAATTT
CCGGCTAAAG TTTTTATTTC CCGCGAAGTA GGAGAGCATA ATTATTTTAG AAAAGCACTT
GAAAAACACC ATATAGCAAT AGAGGACAGA TCGCTGATCC GTACTTTCCC GATCGTAACG
GTACTGGATC CATTTTATTT GAAACACATA GACTGGATCT TTTTCAGCAG CAGGAACAGT
GTTGATTATT TCTTTAACCT GAAACCCATG TTGCCTAAGC ATGTTAAGTT TGGAGTGGCA
GGACGTGGCT CTGAAGATTC GCTAAGAAGA ACTGGTCATT TGGCCGACTA TGTAGGTGAA
GGCGGGGATA TAGACGAAGT AGCAGAATTA TTTGCAGAAG AGGTATCGGG TAAGACGGTA
TTATTTCCCA GGGCACAGGA TTCTTTATTA AGTATCCAGA AAGCCTTAAA ACCGGATACC
AAGGTGATTG ACCTGCCGAT TTATGAGACC GTTATTGAAG AAGATATAGA CCAGACTTAT
GCGGATGTGC TGATATTTAC CAGCCCATCT AATGTAGACG CGTATTTTGT TGACAATTTA
TTGGAACCAG GACAGCGGGT AATTGCAATC GGAAATTCTA CAGCCAAAAA GTTTGAGGAG
ATGGGGGTAG ATTGTATTTT ACCTTATTCT CCGGATGAAA TCGGTTTAGC TGAAGCTGTT
TTCGGGATAG ATATAAAATA A
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| Protein sequence | MKRLIIGTRG SDLALWQANF IKDKLAAIGV EAELKIIKTQ GDKILNLRLD KLEGKGFFTK
ELEEELLGGT IDIAVHSHKD LPTVHPAGLT IAAVTEREDP SELLLILKDC VSINHKLSLK
KGAMVGTSSN RRKAQLLALR PDLNIEDLRG NVPTRIQKLR DEDYDAILLA RAGVNRLNID
LSEFHVEVVD TTELVPAPAQ GALAIQIREN ENELFDILQQ INHSETAEEI AIERKVLNLF
EGGCHMPLGC YCKKEDGQYE VWTSKAETDE DFPDRLFYRV EKLDGLAEKI VAKFSADRKF
PAKVFISREV GEHNYFRKAL EKHHIAIEDR SLIRTFPIVT VLDPFYLKHI DWIFFSSRNS
VDYFFNLKPM LPKHVKFGVA GRGSEDSLRR TGHLADYVGE GGDIDEVAEL FAEEVSGKTV
LFPRAQDSLL SIQKALKPDT KVIDLPIYET VIEEDIDQTY ADVLIFTSPS NVDAYFVDNL
LEPGQRVIAI GNSTAKKFEE MGVDCILPYS PDEIGLAEAV FGIDIK
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