Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3403 |
Symbol | |
ID | 8254522 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 4050670 |
End bp | 4051743 |
Gene Length | 1074 bp |
Protein Length | 357 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644937055 |
Product | glycoside hydrolase family 43 |
Protein accession | YP_003093659 |
Protein GI | 255533287 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3507] Beta-xylosidase |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000194853 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAACCA TACCGTTTTT CCTGGCTTTG ATCTGGCTTT TAATGGTAAC CTGCGGCAAA AAAAATGTGC CGCAGGAACC GCAACCAACT GGAACTGGTC CCAGCGCCAA CCCAGTACAA TACAGAAACC CTGTATTTGA ACCAATACTT GCAGATCCAA GCATCATAAA AGGTACAGAT GGCTGGTATT ATGGTTATGG AACAGAAGAT GATTGGGGCG ATGGAAAGGG AAACAGGCTC GTACCGGTTG TACGTTCACT CGATCTGGTG AGATGGTCCC TGGTTGGAAA TGCTTTCACG GCAAAACCTG TATGGAAAGC CGAAGGCGGT TTATGGGCAG TAGATGTGGT GCGGGTAAAC AACCTGTACC ATATGTACTA TTCTTTCTCG CTTTGGGCAG ACCGCAATCC TGCCATTGGG CTGGCTGTGG CCAATTCACC TGCAGGGCCA TTTGTAGACA AAGGAAAACT TTTTTTTAGT GAGGAGATAG GGGTGCCTGT CTCGATTGAT CCGCATTACT ACGAAGAAAA TGGCAAAAAG TATCTATTTT TCGGTAGTTA TAGCTCACAA ACCGTTCAGG GAACGTATGC AGTAGAGCTA ACTGCAGATG GCTACGCCGT AAAAGACATC AATCAAAAAA CAAATATTGC TGCCGGGGAT TTTGAAGCCG TAATGATTCA CAAAAGAGGC AACTACTATT ATTTTTTTGG CTCAAAAGGC AGCTGCTGCG ATGGGGCTGC CAGCACTTAT AACGTCAGGG TCGCACGATC AGAAAATCTG CTTGGCCCTT ACTTGGATCA AGCAGGTAAA AACATTGTGC AGCGAGGAAA TGGTACGCTG ATCTTGCAGG GCAATTCCAA GTTTGCAGGT CCGGGACACA ATGCTAAAAT CATTACCGAC AAAAACGGGA CGGACTGGCT CTTCTACCAT GCTATAGATA AAATGAACCC TAAGGTATCC AGCGGTGCAA GCAGAAGAAT GCTGATGCTC GATAAGCTCA GTTGGGTAGA GGGATGGCCT GTAATCGCCA ATGGGGTTCC GAGCGGCGAC ATCCAGGCTG GCCCTGAATT ATAA
|
Protein sequence | MKTIPFFLAL IWLLMVTCGK KNVPQEPQPT GTGPSANPVQ YRNPVFEPIL ADPSIIKGTD GWYYGYGTED DWGDGKGNRL VPVVRSLDLV RWSLVGNAFT AKPVWKAEGG LWAVDVVRVN NLYHMYYSFS LWADRNPAIG LAVANSPAGP FVDKGKLFFS EEIGVPVSID PHYYEENGKK YLFFGSYSSQ TVQGTYAVEL TADGYAVKDI NQKTNIAAGD FEAVMIHKRG NYYYFFGSKG SCCDGAASTY NVRVARSENL LGPYLDQAGK NIVQRGNGTL ILQGNSKFAG PGHNAKIITD KNGTDWLFYH AIDKMNPKVS SGASRRMLML DKLSWVEGWP VIANGVPSGD IQAGPEL
|
| |