Gene Phep_3308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_3308 
Symbol 
ID8254427 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp3921111 
End bp3923021 
Gene Length1911 bp 
Protein Length636 aa 
Translation table11 
GC content42% 
IMG OID644936960 
Product1,4-alpha-glucan branching enzyme 
Protein accessionYP_003093564 
Protein GI255533192 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0296] 1,4-alpha-glucan branching enzyme 
TIGRFAM ID[TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0744248 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAGCAG TGCTTGTCCA TAGCTTATTC AGTGATTTTG ATATTTCTTT ATTTGTTTCA 
GGGAAGCACT TTAGGTTGTA TGAGAAATTT GGAGCGCAGC TGATCCATGT TGAGGGGGTA
GCGGGTACTT ACTTTGCGGT TTGGGCGCCC AATGCCCAGG CTGTACATGT AATTGGCGAT
TTTAACCAAT GGAACCGGTC GGCCCATGCT TTAAACAAAC GCCTGGATTC ATCTGGCATA
TGGGAAGGTT TTATCCCTGG TATAGGCAAG GGTGAGCTTT ATAAGTTTTT AGTAAAAGGT
TTTGACGGGC TGGAAGTAGA AAAAGGCGAT CCTTATGCCA AAAGATGGGA ACATCCGCCA
AAAACAGCTT CTATTGTTTG GGACAATGAT TACAAATGGA AAGATAAAGC CTGGTTAAAT
AAGCGCCCTA AATTAAATGC ACTGAACAAG CCCATGTCGG TTTATGAGGT ACATCTGGGA
TCCTGGCAGC GTGATCCGAG TGAACCTGAT CGGGTGCTGA CCTATATGGA AATTGCCAAT
AGCCTTGTTC CTTATGTGCT GGATATGGGT TTTACGCATG TCGAGTTCAT GCCTTTAATG
GAATATCCCT ACTTCCCATC CTGGGGATAC CAGATTACCG GATATTTTGC AGCAAGTTCG
CGGCATGGTA CTCCTCAGGA ACTGATGTAC CTGATCAATG AACTGCATAG AAATAACATT
GCTGTAATTA TGGATTGGGT GCCTTCTCAT TTTCCAGGTG ATTCGAATGG CCTTTACCAT
TTTGATGGTA CGCATTTGTA CGAACATTCG GATATGCGCA AAGGTTTTCA TCCCGACTGG
AAATCCTATA TTTTTAATTA CGACAGGAAC GAAGTGCGTT CATTCTTAAT CAGCAATGCA
CTGTACTGGC TGGATAAATT CCATATAGAT GGGTTAAGGG TTGATGCCGT AGCTTCTATG
CTTTATTTCG ACTTTTCCCG CAAAACAGAG GATGCTGCCA AAAATGAATA TGGGGGCAGT
GAAAACCTGG GGGCTATCCA GTTTTTAAAA GACCTTAACA TTGCGGTATA TGGTAATTAC
GAAGGGGTAC ATACCATTGC CGAAGAAAGC AGTACTTACC CCCTCGTAAC ACATCCGGTA
CACAATGGTG GCCTTGGTTT TGGGATGAAA TGGATGATGG GCTGGATGAA CGATACGCTG
AAATATTTCA AAAATGATCC GATCAACAGA AGGTACCATC ATTATCAGCT TACTTTCAGC
ATTACATACG CTTTTACAGA AAACTTTATG CTTCCGTTTT CTCATGATGA AGTGGTACAC
GGCAAGTCAT CCATGATTTA TAAAATGCCT GGCGATGAGT GGCAGAAGTT TGCCAATTTA
AGGGTATTGT ATGCCTATAT GTTTACCCAA CCTGGTACAA AGCTCTTGTT TATGGGGAAT
GAATTTGCGC AGACCCATGA ATGGGATTTT AAAAGTTCGC TGGACTGGCA CTTACTGGAA
CACGCACCTC ATATTGGTAT GCAAAAAACC GTAAGGGCAA TCAATAAATT ATATGTTTCT
GAGCCGGCCC TATTTGAGCA TAGCTTTTCT GCTGAAGGTT TTGAATGGAT CAATGCGGAT
GATGCCAGGC ATTCTATTTA CATCTACATC AGAAAAGGCA AAAAGGCAAA AGATACCTTA
ATTGTAATTT TGAACCTGAC ACCTGTTTAC AGAGAAAATT ATAGAGTTGG CCTACCATTC
AGAGCCAAAT GGAAGGAAAT ATTTAATACA GATGCCAAAG AGTTTTTTGG CAGTGGAAAG
CTGAACAATA AACTGATACT TCCTGAAAAA GTAGGTTGCC ACAACAGGGA CTACTCGGTT
GTATTGAATG TTCCACCCCT GGCGGTTACC ATACTTAAAC AAGGCGTTTA G
 
Protein sequence
MRAVLVHSLF SDFDISLFVS GKHFRLYEKF GAQLIHVEGV AGTYFAVWAP NAQAVHVIGD 
FNQWNRSAHA LNKRLDSSGI WEGFIPGIGK GELYKFLVKG FDGLEVEKGD PYAKRWEHPP
KTASIVWDND YKWKDKAWLN KRPKLNALNK PMSVYEVHLG SWQRDPSEPD RVLTYMEIAN
SLVPYVLDMG FTHVEFMPLM EYPYFPSWGY QITGYFAASS RHGTPQELMY LINELHRNNI
AVIMDWVPSH FPGDSNGLYH FDGTHLYEHS DMRKGFHPDW KSYIFNYDRN EVRSFLISNA
LYWLDKFHID GLRVDAVASM LYFDFSRKTE DAAKNEYGGS ENLGAIQFLK DLNIAVYGNY
EGVHTIAEES STYPLVTHPV HNGGLGFGMK WMMGWMNDTL KYFKNDPINR RYHHYQLTFS
ITYAFTENFM LPFSHDEVVH GKSSMIYKMP GDEWQKFANL RVLYAYMFTQ PGTKLLFMGN
EFAQTHEWDF KSSLDWHLLE HAPHIGMQKT VRAINKLYVS EPALFEHSFS AEGFEWINAD
DARHSIYIYI RKGKKAKDTL IVILNLTPVY RENYRVGLPF RAKWKEIFNT DAKEFFGSGK
LNNKLILPEK VGCHNRDYSV VLNVPPLAVT ILKQGV