Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3307 |
Symbol | |
ID | 8254426 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 3918398 |
End bp | 3921127 |
Gene Length | 2730 bp |
Protein Length | 909 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644936959 |
Product | Tetratricopeptide domain protein |
Protein accession | YP_003093563 |
Protein GI | 255533191 |
COG category | [S] Function unknown |
COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.106188 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGAATAG CTAAATCCTG GTTTTGTACG CTTCTTATTT ATCTAGCATT TTTTGGTTTT GTAGTGGCAC AACCTGCAGA AAACATACCC CAATATCTCC GTAAAACGCT CGATTCTTTA AAAACAAAAG ATAATCTCTC GGAATGGATC TATACCAGGA TTGATTATTG TTATCACAAC CCCAGTCAAA GTCTGCCTTT TTTAATGCGC ACAGAACGGG ATAGCTGGCG TAAACCGCAA TATACTCCTG AAAAAGAAGC CTGGTTAATG CTCCTCAGTA ACCTGGGCTA TAACCAGATG TATTCCGGAA ATATCCTTCA ATCCATATCT TATTATGAAC TGGCTTATAA TTATTATATA AACCATAAAC TGAATGTGGA GGGTATAGCC GAATATGTCT TGAAACCCTG GGCAAACAAT TGTACCCGTT TGGGCGATTA CGAAAAGGCG CTTTTCATTC AGCAAAAAAC GCTCGACTAT GCAAACAAAG AGCGCAATGA TTCGTTAGCT GTGGCTGTTT ATAATAACAT GGCCATCTCT TACCGTTCTT TAGGCGATTT TAAAAATGCA GAGGACTGTA TTCTACTTGG CAAAAAAAAA GCCGGCTATA CAGCTGTTGA GCTAATTTTA TTAGACAATA CACTGGCTGA TATTTATAAT GATAAAGAAG AACTGGAGCT TGCCGAAAAA GTGATCGGCA AGAATATTGC CCGGCAAGAG AGCCGTAAGC AAGATTTCGA AACTGCTTAC TGGCTGATGA GCAGTTACAT TACCGCAGGT AACATCCAGT TCAGGAAAAA TAATTTCAGT TTGGCCTGGA AGTATTATAA ACTGGCCTTA AGCATTAATG ATCAATATTA TAAGGGGAAC CGCCTAAGGG AAAAGGCTTA TACCTATACC CAGATGGGTA AGATTAAGCT GGAACAAAAA CAGGCGGCTG AAGCCATACA TTACTTTAAC CAAACTTTAA GCTCCTTTGG CCTGATAGAC AACAGTCTGC AAATCCCACT AAAAAAAATA TTTGGGGATA ATCGTCTGGT AGATGTTTTT TACCAAAAAT CGCTGGCACT TAACTTACTG GGAAAAGAAA AGGAAGCGCT GGAAAACATC CGCCTCGCTC TGCTTGCTGC AGATAAGATC CGCTTTGAAC TTGCAGATGT AAAAACCAAA CAACGCTTTC AGGCCGAGAC CAAACAGATG GCAGAAAAAG CAATCGCCAT TGCTTTTGAT TTGCTTCAAA AAACAAAACA GCATAACTAT GCAGTAGCAA TTGTTGACAT CATTGAGCAA GCCAAAGCCC GTACCCTGTT GGACGATATC AGAAGAAGCC AGCAGCAGTT AACGCTTTCA ACAAATGACA CCCTATTTCA ACAAAAAGCA AAGCTTGAAC AGGCTATCGC CTACAATGAG AGGGAACTGT TACAAAGTAA GGGGGATATT AAAGAAGCAG AACAACGCTA TGCTGTATTA AAGTTTAAAC TGGAAGCGCT GGAAAAGGAT TTAACCAAAC GTTATCCATC CATGATCATA AATAAAGATA GTCCAGGATT TGGGCGTACC GCTGAACCGT TAAGCCAATT GCCTGCACAT GCTCATTTCA TTGCGTTCTT TTTAGGCACA CAAAATCTTT ATGTGGTAGA AATTTACGGC AACAGGGTAA AACACATTAA ACAGGTCCGG GCAGCCCCGG CAATAAAAAA AACGATCTTC AATTTTGTAA GTACTTATTA CCATAGTGGC CCCTCAGCAA TGATGAATCA GCCAGAGGCC TTCTTTTTGG CTTCAAATCA GATTTACAGA GCTTTACTTG GTGATCTTAA ATTTAACAAA AATGATAAAC TGATCATTAT ACCCGATGAA ATTATTGGTT ATTTATCCTT TGACGGCCTG ATTACGGATA AAAATTACGA ACCATCCATA GCAAACTGGC CCTACCTTAT TAGAAGCCAG TCCTTGTCCT ATGCTTTTTC TATCCAGACC TGGATAAACC AGGCAGCAAA AAAAACTATC CAAACCCCTA ATTTTTCGGG TTTGTTTATT ACCCATCAAA ATAAAAACAA GCAATTTATC CCTGCTGTAG CCAAAGAAGC TGAGGCTATA GAGAAAATTA TCGGCGGAAG TTTCATGAAA GATAAAGAGG CAGGTGTAAA AGATTTTTTT AATGCATTTG ATAAAGCAAA TGTATTGCAT ATAAGCACAC ATGCTTACCT TTCCGGACTG CAAAAAGAAC CCACCTTGTC CTTTAATGAC AACGAAGTGT TTCTATTTGA ACTATCTGCC AGAAAAACGG CTCCCGACCT GATCGTATTA AGTGCATGCA GAACAGCAGA TGGTATAATG AATGCAAGTG AGGGCATTAT TAGTTTGAGC AGAGGATTTG CAGCAATAGG TACCGGGGGC ACTATTGCAG GACTATGGAA CGTAAACGAC AAGGCAGCAT CAGAAATTAC GGCAACCTGT TACAGCAACA TGTTGCAGGG ACAGGAAATC AGCACGGCAT TACACCATGC CAAACTAAGC TGGCTGCAAA ATAAAGAAAG ACAGGCACAG GAATACCTGC CCTATTACTG GGACCCACTT ATTTATATGG GCTACGATAA AAAAGTAACA TTAAAGCCTG CCCAAAGCAT GCTGCAGACC TACGGACTGC CCGCCACCCT CTTACTGGCC GCTGCATCCG GTATTTATCA CCTTTTAAAG ATCAGAAAAA AAACTAAACG CCTTGTTTAA
|
Protein sequence | MRIAKSWFCT LLIYLAFFGF VVAQPAENIP QYLRKTLDSL KTKDNLSEWI YTRIDYCYHN PSQSLPFLMR TERDSWRKPQ YTPEKEAWLM LLSNLGYNQM YSGNILQSIS YYELAYNYYI NHKLNVEGIA EYVLKPWANN CTRLGDYEKA LFIQQKTLDY ANKERNDSLA VAVYNNMAIS YRSLGDFKNA EDCILLGKKK AGYTAVELIL LDNTLADIYN DKEELELAEK VIGKNIARQE SRKQDFETAY WLMSSYITAG NIQFRKNNFS LAWKYYKLAL SINDQYYKGN RLREKAYTYT QMGKIKLEQK QAAEAIHYFN QTLSSFGLID NSLQIPLKKI FGDNRLVDVF YQKSLALNLL GKEKEALENI RLALLAADKI RFELADVKTK QRFQAETKQM AEKAIAIAFD LLQKTKQHNY AVAIVDIIEQ AKARTLLDDI RRSQQQLTLS TNDTLFQQKA KLEQAIAYNE RELLQSKGDI KEAEQRYAVL KFKLEALEKD LTKRYPSMII NKDSPGFGRT AEPLSQLPAH AHFIAFFLGT QNLYVVEIYG NRVKHIKQVR AAPAIKKTIF NFVSTYYHSG PSAMMNQPEA FFLASNQIYR ALLGDLKFNK NDKLIIIPDE IIGYLSFDGL ITDKNYEPSI ANWPYLIRSQ SLSYAFSIQT WINQAAKKTI QTPNFSGLFI THQNKNKQFI PAVAKEAEAI EKIIGGSFMK DKEAGVKDFF NAFDKANVLH ISTHAYLSGL QKEPTLSFND NEVFLFELSA RKTAPDLIVL SACRTADGIM NASEGIISLS RGFAAIGTGG TIAGLWNVND KAASEITATC YSNMLQGQEI STALHHAKLS WLQNKERQAQ EYLPYYWDPL IYMGYDKKVT LKPAQSMLQT YGLPATLLLA AASGIYHLLK IRKKTKRLV
|
| |