| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3260 |
|---|
| Symbol | |
|---|
| ID | 8254379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3870385 |
|---|
| End bp | 3871734 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644936913 |
|---|
| Product | oxidoreductase domain protein |
|---|
| Protein accession | YP_003093517 |
|---|
| Protein GI | 255533145 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0260407 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTA GAGAATTTAT TAAAAACGGT GCATTGGCCA CTGCTGGATT TACCATCCTT
CCTGCGGGAA GTCTTTTTGC CTCATCAACA GGCAAAGTAC GCTTAGGTTA CATAGGCGTT
GGTGCCAGGG GAATGAGCCA CATCGCTGAA GGAGCGCTTA GGGATGATGT AGAAATTGTT
GCGGTTTGCG ATACTCAGGA AAGTTCATTG AAAATTTGCA GGGCATTTTT AAGTAAAAAA
GGAAAGCCGG CGCCTACAGA ATATACCGGT GGAACAGATG CTTATAAAAA GCTGCTGGAC
CGTAAGGATG TTGATGCAGT AATTATTGCT ACGCCATGGC AATTTCATAA AGAACAGGCT
GTAGATGCCA TGAAAGCCGG TAAATATGTG GGCTGCGAGG TGATTGCAGG TTTAACTGTT
TCAGACCATT GGGACATTGT GAACACTTCG GAAAAAACAG GGATGCCTTA TATGACTCTG
GAAAATGTAT GTTACAGAAG GGATGTGATG GCGGCACTAA ATATGGTAAG GCAGGGACTG
TTCGGCGAAC TGGTACATCT GGAAGGTGGC TACCAGCATA ACCTGAGAAA TGTATTGTTT
AATGACGGGA AAAAATATTA TGGTGGAGGC GTGGAATATG GGCCAAAAGC CCTGAGCGAA
GCGCAATGGA GAACCCAGTT TAATATTGAC CAGGATGGCG ACCTGTATCC TACACATGGG
GCTGGCCCGA TCATGCACTA TGCAAACATC AATCATGGTA ACCGCTTTAC CAACCTGGTT
TCCTTCAGCT CCAAGGCCAG GGGGCTGGCC GCTTATGTTG AAGAGCTGTC GCCCGGGCAT
CCCAATGCTA AACTGAATTA CAAAAATGGC GATGTAACCA CAACGATGAT CAATTGTGCA
AATGGGGAGA CGGTTTTGTT AAGTCATGAT ACCCATCTGC CCAGACCTTA CTCCATTGGT
TTTAGGGTAC AGGGAACGGA GGGGATCTGG ATGGACGTGA ACAAATCTAT TTATATTGAA
AAGCAGGCGA AAAATAATGA TGCCTGGGAA CCTGTGAATA CATGGTTTGA AAAATATGAC
CACCCGCTAT GGAAAAAATA CGAAAAGGAA GCTGTTGGTG CCGGGCATGG TGGGATGGAC
TGGTTCGTAT TTAACGGTTT TATACAGGCA GTAAAGCAAA AGCGGCAAAC ACCAATTGAT
GTATATGATT CGGTAACCAT GAGCGTAATT GCACCGCTAT CTACAAAATC TTTAAAAGAG
GGCAATATGC CCCAACAATT TCCGGATTTT ACAAAGGGGA AATGGAAGGA CAGGAAGCAG
CTGTTTGCCC TAGACGATAG CGGATTTTAG
|
|---|
| Protein sequence | MKRREFIKNG ALATAGFTIL PAGSLFASST GKVRLGYIGV GARGMSHIAE GALRDDVEIV
AVCDTQESSL KICRAFLSKK GKPAPTEYTG GTDAYKKLLD RKDVDAVIIA TPWQFHKEQA
VDAMKAGKYV GCEVIAGLTV SDHWDIVNTS EKTGMPYMTL ENVCYRRDVM AALNMVRQGL
FGELVHLEGG YQHNLRNVLF NDGKKYYGGG VEYGPKALSE AQWRTQFNID QDGDLYPTHG
AGPIMHYANI NHGNRFTNLV SFSSKARGLA AYVEELSPGH PNAKLNYKNG DVTTTMINCA
NGETVLLSHD THLPRPYSIG FRVQGTEGIW MDVNKSIYIE KQAKNNDAWE PVNTWFEKYD
HPLWKKYEKE AVGAGHGGMD WFVFNGFIQA VKQKRQTPID VYDSVTMSVI APLSTKSLKE
GNMPQQFPDF TKGKWKDRKQ LFALDDSGF
|
|---|
| |