| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3257 |
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| Symbol | |
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| ID | 8254376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3864616 |
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| End bp | 3866184 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644936910 |
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| Product | RagB/SusD domain protein |
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| Protein accession | YP_003093514 |
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| Protein GI | 255533142 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00159706 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0650602 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGA ATTATAACAA CTTTATCGCA ATGTTACTAT TGCTTGCAGC AGCCCTGGCT
TCCTGTAAAA AAGATCTGGC ATTAACACCC ATCAGTACCT TGAGTGATGA CAGTTATTGG
AAAAGCATAG ATCAGTATGA TGCCTTTGTT TCTGGTATAC ATAGCAGGTT TCGTGGTCAT
AATGGAAACC TGATGTTCCT TGGCGAACTG CGTTCAGATA TTTATGGTAA TGATCCCGGA
GCTACAGCGT CTTTTACAGG CGAAGCTTCA CAAGGATTGG AACGTATGTG GCTGCACTCC
TTAAATCTTG ACATCCCGGG GGTAAGTACT TATGGAACAT TCTATACCAA TATCAATCAG
CTTAACCTGC TAATCAATAA ACTGAACACT GGAAATATTG TCCCGGAGGC TACAAAGAAA
TATTATCTGG GTATAGCCTA TGGCATGCGT GCCTACTACT ATTTTCAGCT TTACCAAAGC
TGGGGCAAAA CAGTCATCCA GTCAGATTTC ATTGATGCCG GCAATCTGGA CCTTTTCAAT
CTTGCAAAAG CGGCCTCCCC GGCAACTGAA GTAATCACAT TTGTTAAGCA GGATATTGAT
AAATCAATTG AAAATTTTGG TGCCGACTAC ACCATCAGGC GCAATAAAGC ATATTGGTCA
AAATCAGCAA CGCTGATGCT TAAAGCAGAG GTGTATTTAT GGACTGCACA CAGGGCAGGT
GGAATTGCTG ATGCCAATGT AGCTAAGGCA GCTTTGAATG ACATCAAGAC CAATGTTCCT
GCATTGGGAT TGCTTACCAC CTCTTCTAAT GTTGCAAACA CACCTTATGC CGATCTCTTC
GGTACAACCA AAGGAAACAA GGAAATGATC ATGGTTTGCA GGTACCAGCT GAATGAAGCA
GAGATGAGTT TTATTCCCGC TTCATTTACC CCGCAGTCGG GTCTGATTGC CAATTTTTAT
GATTCCCTGG CCAACCGCAA GTTCAATGTT ACTTCTGAGA ATTACGGAGG ATTGCTTCGT
GCACCAGTTA AAATCGCAAC CTACAGAAAA TTCAATGAGA AAGATACGCG AAGGGATGCC
TCTATACAAG CAGCATATTC ACTGCTAGGC CCGGGAACCT ATAAAATTGC AGGTTGTTTC
CTCAAAAAAT ATCAGGGACA ACAGGATGCA GGTGTCAGAA GATACACCAA CGACTATCCA
ATTTATCGTT ATGCTGACCT GTTACTTTTA ATGGCAGAAG CCAAGGAAAT ATTGGGCGAA
AGTCCGGCTG CGGAAATCAA TGAAGTTAGG GCCAGGGCCT TTGGTGCCAA CTATAGTTTA
GCGGTGCAGG GCTTTCCAAA CCAGGCGGGC GATAACGACA TAAAAAATAC AATTTTAAAG
GAACGTTTAT TGGAGTTTAT TGGGGAAGGC AAACGCTGGT ATGATCTGAG AAGAATGGGC
GATAGCTTTG TTTTTGCCAA TACCAGTTTG CCTGCTTCAG ATGCTTACAA ATTGCTGTGG
CCTGTTGACA GAACAACATT AACCAATAAC CGCGCTTTAA CACAAACAGA CGGTTATCCA
CAATTTTAA
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| Protein sequence | MKKNYNNFIA MLLLLAAALA SCKKDLALTP ISTLSDDSYW KSIDQYDAFV SGIHSRFRGH
NGNLMFLGEL RSDIYGNDPG ATASFTGEAS QGLERMWLHS LNLDIPGVST YGTFYTNINQ
LNLLINKLNT GNIVPEATKK YYLGIAYGMR AYYYFQLYQS WGKTVIQSDF IDAGNLDLFN
LAKAASPATE VITFVKQDID KSIENFGADY TIRRNKAYWS KSATLMLKAE VYLWTAHRAG
GIADANVAKA ALNDIKTNVP ALGLLTTSSN VANTPYADLF GTTKGNKEMI MVCRYQLNEA
EMSFIPASFT PQSGLIANFY DSLANRKFNV TSENYGGLLR APVKIATYRK FNEKDTRRDA
SIQAAYSLLG PGTYKIAGCF LKKYQGQQDA GVRRYTNDYP IYRYADLLLL MAEAKEILGE
SPAAEINEVR ARAFGANYSL AVQGFPNQAG DNDIKNTILK ERLLEFIGEG KRWYDLRRMG
DSFVFANTSL PASDAYKLLW PVDRTTLTNN RALTQTDGYP QF
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