| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3090 |
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| Symbol | |
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| ID | 8254208 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3689650 |
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| End bp | 3691146 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644936744 |
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| Product | siroheme synthase |
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| Protein accession | YP_003093349 |
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| Protein GI | 255532977 |
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| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0730] Predicted permeases
[COG1648] Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) |
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| TIGRFAM ID | [TIGR01470] siroheme synthase, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000482671 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0254521 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAAGGCA ACCAGTTATT TCCTGTCTTC ATCAAACTGA ATACCATTCA TACCGTATTG
GTAGGCGCTG GTCCTATCGG TTTAGAAAAA CTTTCTGCAT TGCTGGATAA CAGTCCGGAG
GCAAAGGTTA CTGTTATTGG AATTGATGTT TTACCGCAAT TGCAAACACT TGCTGATGGT
TATGAAGGAG TAAATGTATT GCAAAAACCA TTTGAACCTG CAGATTTAAA CGGGGCAGAC
CTGGTAATTG CAGCTACGAA TAATGAACTG CTGAACCAGG AGATCAGGAT ACAGGCCAGT
GAGCGCAATT TGCTGGTCAA CTTTGCCGAT AAGCCGGAAC TCTGCGATTT TTATCTTGGC
TCGGTTGTTA AAAAAGGGGA TTTAAAAATA GCCATTTCTA CAAACGGTAA ATCGCCCACT
ATGGCCAAAC GTTTAAAAGA AGTACTAAAC AATGGCTTGC CAGGCGAATT GAACGATACC
CTGCAAAACA TGCAGGCACT TAGAAATACA TTGAATGGCG ATTTTGCTGC AAAAGTAAAA
AAACTAAATG AAGTGACATC GGCCCTGGTT GAAGGAAAAG CTTCGGTTGA AGGAGTGGTT
GTAAGTGATG GAAAGCCTAA ATTGGGTAAA ATGAAATGGC TGATATGGCT GGCCATCGTA
TTTGCTTTTG CTATAGTGGT GGCAGCTTTT TGGCATAAGG AACCCGAATT TCAGGCTTTT
GTAGCCAATA TTAACCCGAT GTTTTACTGG TTTTTGCTGG GTGGTTTCAT CTTTGCGATG
ATAGATGGCG CCATAGGGAT GTCGTATGGT GTAACCTCTA CTTCCTTTTC GCTGGCGATG
GGTGTGCCAC CTGCATCAGC AAGTATGGGA GTACATTTGT CAGAAATTTT AAGCAATGGC
ATTGCCGGCT GGATGCATTA CCGTTTTGGA AATGTGAACT GGAAACTGTT TAAGCTCTTG
CTGATACCAG GTATTATTGG TGCAGTAACG GGTGCTTACC TGTTGTCCTC ACTGGAACAT
TACAGCCATT ATACCAAACC AATAGTTTCT TTGTATACTT TAATATTGGG TTTTGTAATT
TTGTCTAAAG CCTATCAGGC TAACCGTAAA AGTGCAGTCA GAAAAAATAA GATTAAAAAG
ATTGGTTTGC TGGGGCTTTT TGGTGGTTTT ATTGATGCTG TTGGTGGTGG TGGCTGGGGT
TCAATTGTAT TGTCAAGCTT AATCGCGGGT GGAAGAAATG CACGTTTCTC TTTAGGTACC
GTAAAAATCA CCCGCTTTTT TATAGCACTG ATGAGCTCAC TTACTTTTAT CACCATGCTG
AATGGTGCAC ATTGGGAGGC TGTTGCAGGT TTGGTGATTG GAAGTGCCCT GGCCTCGCCC
ATAGCGGCAA AGGTTTCCAA CAGGATCTCT GCTAAAACAA TTATGGTATC GGTAGGTATC
CTGGTGGTTC TGGTGAGTCT GCGCAGCATC GTCAAATTTA TTCTCGAATT AGTATAG
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| Protein sequence | MEGNQLFPVF IKLNTIHTVL VGAGPIGLEK LSALLDNSPE AKVTVIGIDV LPQLQTLADG
YEGVNVLQKP FEPADLNGAD LVIAATNNEL LNQEIRIQAS ERNLLVNFAD KPELCDFYLG
SVVKKGDLKI AISTNGKSPT MAKRLKEVLN NGLPGELNDT LQNMQALRNT LNGDFAAKVK
KLNEVTSALV EGKASVEGVV VSDGKPKLGK MKWLIWLAIV FAFAIVVAAF WHKEPEFQAF
VANINPMFYW FLLGGFIFAM IDGAIGMSYG VTSTSFSLAM GVPPASASMG VHLSEILSNG
IAGWMHYRFG NVNWKLFKLL LIPGIIGAVT GAYLLSSLEH YSHYTKPIVS LYTLILGFVI
LSKAYQANRK SAVRKNKIKK IGLLGLFGGF IDAVGGGGWG SIVLSSLIAG GRNARFSLGT
VKITRFFIAL MSSLTFITML NGAHWEAVAG LVIGSALASP IAAKVSNRIS AKTIMVSVGI
LVVLVSLRSI VKFILELV
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