| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3070 |
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| Symbol | |
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| ID | 8254187 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 3668807 |
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| End bp | 3670654 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644936723 |
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| Product | transcription termination factor Rho |
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| Protein accession | YP_003093329 |
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| Protein GI | 255532957 |
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| COG category | [K] Transcription |
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| COG ID | [COG1158] Transcription termination factor |
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| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.581675 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00476927 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTAATA AAACAGAATT AAATGAAAAA CTCACTGCTG AATTGCGTGA GATAGCAAAA
AATCAGGGCA TCCTAAATGC CGATGAATTG CGCAAGGCTG AACTGGTCGA AATCATTGCT
CAAATAACCG AGCAGCAAGC CGAAGCAGAA GCTACTCCCA AAGAAGCTCC GGTAAAAGCT
GTAAAAACAA AAGCTGTAAA GGAAAATGCA GCAAAAAACA GCCCTGTTAA GAACAGTGGG
AACAAAGCGC CCGTCCAAAA AGAATTGCCT AATGATGAAA ATACTTTAAC AGCAGATTCT
GCTAAAGCAA CTCCGTTAAA AGAGCGCCCT GTAAAGGAAC ATTTAGCAAA AACTAGCGCA
GCCAATAACC CGTCAAAAGA TGCCCAGGGT GATAAACCGG CTAGAAAGAG AATCCGCATT
GCACCAAAGG AGGCAGCTGA AGAAAATGTA CAAAGGCCAT TTAACCGGGC TTCTTTGTTT
GAGCCCCATC CTGTAGCTGA AGCTTACAAA CAGGAGACAC TTTTTGAAGC ACCTGTTGAA
GTTGTAACTG AAGAAGCTCC GGCAGTAACA CCAGCGGAAA CAACAGTACC TTCTTTTCCA
AACGAAACTA AAAACCCTGC ACATCCGGCA AACCAGGACA ATAAAAAACA GCGGCCACTG
GAAAACAAAC CTAAAAATCA AAACAGCAAC GGCAACCATA AGCAAAACGA AAACAGCTAC
TCCAATCTTG ATTTCGACAA TACCATTACC AACGAAGGTG TTTTGGAAAT TATGCCTGAT
GGATATGGCT TTTTAAGATC TGCCGACTAC AATTACCTTT CTTCGCCGGA TGATATTTAT
GTATCACAAT CGCAGATCAA ATTATTCGGT CTGAAAACAG GTGATACCGT AAAAGGAAGC
ATCCGGCCAC CAAAAGAAGG TGAAAAATAC TTTCCGCTGG TAAGGGTTGA AACCATCAAT
GGCCGTTTGC CCGCTGATGT GCGTGACCGT GTTCCTTTCG ATTACCTTAC CCCATTGTTC
CCTACAGAAA GGTTAAATCT TTTTACAGAA ACAAATAACT ATTCCACCCG TATTATAGAC
CTGTTTACAC CTATAGGTAA AGGACAACGT GGCTTAATTG TAGCCCAGCC TAAAACTGGT
AAAACAAACC TGCTGAAAGA GGTAGCCAAT GCCATTGCTA AAAACCATCC TGAAGTTTAT
CTGATCATTT TATTAATCGA TGAGCGCCCG GAAGAGGTAA CAGACATGGC CAGAAGTGTA
AGGGCTGAAG TAATTGCCTC TACTTTTGAT GAACCGGCAG AACGCCACGT TAAAATCGCC
AATATTGTAC TCGAAAAAGC CAAACGTCTG GTAGAATGTG GCCATGATGT AGTGATCCTG
CTCGATTCCA TTACCAGATT GGCCAGAGCT TACAATACAA CGGCCCCTGC CTCAGGAAAA
ATCTTGTCAG GTGGTGTTGA TGCAAATGCC CTTCACAAAC CTAAGCGTTT CTTTGGTGCA
GCACGTAACA TCGAAAAAGG TGGCTCATTA ACCATACTTG CTACTGCTTT AACAGATACA
GGATCGAAAA TGGATGAAGT GATCTTTGAA GAATTTAAAG GTACTGGTAA TATGGAACTT
CAGTTAGATC GTAAATTATC TAACAAACGT ATTTTCCCTG CTATCGACAT TACAGCTTCA
AGTACACGCC GCGACGATCT GTTGCACGAC AGAGATACTT TGCAGCGGGT ATGGATCCTG
CGCAACCACC TGGCAGACAT GAACGCCCAG GAAGCTATGG AGTTTGTTCA GGCTCAAATA
AAAGGCACCA AATCCAATGA AGAATTCTTA ATTTCAATGA ATAGCTAA
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| Protein sequence | MFNKTELNEK LTAELREIAK NQGILNADEL RKAELVEIIA QITEQQAEAE ATPKEAPVKA
VKTKAVKENA AKNSPVKNSG NKAPVQKELP NDENTLTADS AKATPLKERP VKEHLAKTSA
ANNPSKDAQG DKPARKRIRI APKEAAEENV QRPFNRASLF EPHPVAEAYK QETLFEAPVE
VVTEEAPAVT PAETTVPSFP NETKNPAHPA NQDNKKQRPL ENKPKNQNSN GNHKQNENSY
SNLDFDNTIT NEGVLEIMPD GYGFLRSADY NYLSSPDDIY VSQSQIKLFG LKTGDTVKGS
IRPPKEGEKY FPLVRVETIN GRLPADVRDR VPFDYLTPLF PTERLNLFTE TNNYSTRIID
LFTPIGKGQR GLIVAQPKTG KTNLLKEVAN AIAKNHPEVY LIILLIDERP EEVTDMARSV
RAEVIASTFD EPAERHVKIA NIVLEKAKRL VECGHDVVIL LDSITRLARA YNTTAPASGK
ILSGGVDANA LHKPKRFFGA ARNIEKGGSL TILATALTDT GSKMDEVIFE EFKGTGNMEL
QLDRKLSNKR IFPAIDITAS STRRDDLLHD RDTLQRVWIL RNHLADMNAQ EAMEFVQAQI
KGTKSNEEFL ISMNS
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