| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3029 |
|---|
| Symbol | |
|---|
| ID | 8254141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 3620746 |
|---|
| End bp | 3622224 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644936678 |
|---|
| Product | Na+/solute symporter |
|---|
| Protein accession | YP_003093289 |
|---|
| Protein GI | 255532917 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0591] Na+/proline symporter |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00934608 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCCGA TTATTCTTTT GTCCTTTCTT CTAGGCTATT TTGCTTTATT AGTTGGGGTG
GCTTATTTCA CCTCAAGAAA CAACTCAGAC AACTCTTCTT TCTTCATTGC AAACAGAAAT
TCCAAATGGT ACCTGGTCGC TTTTGGAATG ATAGGAACGG CATTATCCGG CGTAACTTTT
ATATCGGTAC CCGGGGCTGT AGGCAAAAGT GATTTTGGTT ATTTTCAGTT CATACTGGGC
AATGCAGTCG GCTTTATCAT TATTGCTACG GTATTGCTCC CATTATATTA CAGGTTAAAT
ATCATTTCTA TTTATACCTA TCTTGAAAGA CGTCTGGGTT TCTGGAGTTA TAAAAGCGGT
GCCGTAATTT TCCTGGTATC CCGTACTATT GGGTCTGCTT TTAGGCTTTA CCTTGTTGCT
ATTGTGTTGC AGAAGTTCAT TTTTGATGCC TGGAGTATAC CTTTCTGGTT AACTATAGTT
ATCTGCCTGG TACTCATCTG GCTGTACACA CACAAAGGAG GATTAAAAAC TATTATCATT
ACCGATACCT TGCAAACAGT ATTCCTTTTG CTATCTGTAG TGCTATCAAT CATATTTATT
GCCAGATCTT TAAACCTGGA TATTGCCGGT ACTTTCGAGG CTGTAAAAAA CAGTAGCTAT
TCCAAAATCT TTTTCTGGGA GGATTTTCTG GGTAGTAAAA CGCATTTCCT CAAGCAGTTT
TTTGGGGGTA TTTTTGTAAC CATTGCCATG ACCGGACTGG ATCAGGATTT GATGCAGAAA
AACCTAAGTA TGAAAACCAT TGGCGAAGCA CAAAAAAATA TGTTCACCTT CACCACCGTT
TTTGTGATCA TGAATATCTT CTTTTTAAGT GTAGGTGCTT TGTTATATCT TTTCGCTGCA
AAAAACGGAA TTGATGTTGC AGCATTAAAA ACACCTGACC ACCTTTATCC GGAAATTGCA
TTAAACCACC TGAATGTCAT ACCAGGCATT ATTTTTATGC TGGGATTAAC CGCCGCGACA
TTTGCGACCA CTGATTCGGC ATTAACGGCA TTAACAACTT CATTTTGTGT AGATTTTTTA
CATTTCGATA AAAAAGCCGA TCAGAATGAT CCTGCACTGG TTAGCAAACG GCACTTGGTG
CACATTGGAT TCTCTGTGCT GATGGTCGTT GTGATCATGA TCTTTAAAAT CATCAACGAT
GACTCGGTAG TAAATGCCAT TTTTAAAGCA GCCGGGTATA CTTACGGACC ATTGGTAGGT
CTTTTTGGTT TTGGAATGCT GACTAAAAAG GCTGTAACCG ACAAGCTTGT ACCTTATATC
TGTATACTTT CACCAATATT GTGCTTTATA ATTGATATCA ATTCTTTAAA CTGGTTTGGA
TACGCTTTAG GTTTTGAACT GATCATATTA AATGGATTAC TTACATTTGT TATGCTTTGG
ATTACTGGTA AAACATCAAC AACCCAAACC AAATTCTAA
|
|---|
| Protein sequence | MSPIILLSFL LGYFALLVGV AYFTSRNNSD NSSFFIANRN SKWYLVAFGM IGTALSGVTF
ISVPGAVGKS DFGYFQFILG NAVGFIIIAT VLLPLYYRLN IISIYTYLER RLGFWSYKSG
AVIFLVSRTI GSAFRLYLVA IVLQKFIFDA WSIPFWLTIV ICLVLIWLYT HKGGLKTIII
TDTLQTVFLL LSVVLSIIFI ARSLNLDIAG TFEAVKNSSY SKIFFWEDFL GSKTHFLKQF
FGGIFVTIAM TGLDQDLMQK NLSMKTIGEA QKNMFTFTTV FVIMNIFFLS VGALLYLFAA
KNGIDVAALK TPDHLYPEIA LNHLNVIPGI IFMLGLTAAT FATTDSALTA LTTSFCVDFL
HFDKKADQND PALVSKRHLV HIGFSVLMVV VIMIFKIIND DSVVNAIFKA AGYTYGPLVG
LFGFGMLTKK AVTDKLVPYI CILSPILCFI IDINSLNWFG YALGFELIIL NGLLTFVMLW
ITGKTSTTQT KF
|
|---|
| |