| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3009 |
|---|
| Symbol | |
|---|
| ID | 8254121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3601473 |
|---|
| End bp | 3603056 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644936658 |
|---|
| Product | peptidase S41 |
|---|
| Protein accession | YP_003093269 |
|---|
| Protein GI | 255532897 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0793] Periplasmic protease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.237965 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTTTA TCATGATGGC CCTTGGGGCA TGTAAAAAAT CTAAAGTAAC ACCCGAACCA
GATCCGCCAG CTTCGGGCTC AAATGTAAAG CAAACGCCAA CTACCAACAG AACAGAATTA
ACCAATGATT CTTTGTTTTT ATATGCCCAG CAAATCTATT ACTGGAATAC TGCGTTGCCA
TCTTATGATG ATTATGTGCC CCGTCAGTAT AACACCGCAA GTACCGACCT CATTAACTAT
GAGAACAACT TGTTTAATAT CGTAAAATCT TCCGGATCCG CAGATTACAT CGCAGGAAAC
TCAGATCCAA AATACTCCTA TATTGAAGAC ATTACGACCA GAAATCCTGC TGCCGTATCG
GCTGTACCCA ATTCAAGGCT GTCTGTAGAC CTTGATGGCA ATGGAAACGA TACCGGGGTA
ATGTGGATTC CATTTGGTAC CAATAACAGC TATACTATTT TTGTTACTGT TGTATATCCT
GGTTCGGATG CAGAAGCAAA AGGTGTAAAA AGAGGTTGGG CAATCACCAA AATTAACGGA
CGGTCATTCG GTACAAATTA TAACGGTGAA TACAATGCAA TTTATGATGA GTTTGCCAAA
AGTTCAGTTA CAATAGAAGG GTATAAATTT TCCAATGATG TTCAGGGAGA AGCGTTTAAC
CTTACCCTGA CTAAAAAATC GTATAGCAGC AGTCCGGTAT ATGTGTCTAA AGTAATTACT
TCGGGAAGTA AAAAGATCGG TTATCTGGCT TATGGCCGTT TTTCAAATGA AAACAATTCC
TTTACTGCTT TAGGTAATGT ATTCAGCAGC TTTGCTGCCC AGAATGTAAC CGATCTGGTT
GTAGATTTAA GGTATAATGG AGGCGGTTAT ATCAGTACTG CCGAACGTTT GATTAACCTG
ATCGCGCCTA CGACAGCTAC TGGGGTAATG TATAAGGAAT ATTATAATGC AACACTGAGA
GATCAGAAAG CAACCATAAT GAAAAATCAG CCATTACTGG ATGATAATGA TAAGGTTCGT
TACAAAAACG GCCGGATGAT GAATTATTTT GATGATATAG ATTATACGGT AGCCGGAAAT
ACATATTCAT TTAGCAAAAT TGGCAACCTG ACAGGGGTAA GCAATATTGT TTTTCTGGTT
TCCCGCAATA CAGCATCAGC CAGCGAGCTG GTGATCAATT CTTTAAAACC TAAAATGAAC
GTGAAGCTGG TGGGCCAAAC CACTTATGGA AAGCCAATCG GTTTTTTCCC TGTCAGACTT
CAAAACAGGT ATGACGTTTT TTATTCCTTG TTTGAGACTA AAAATTCGGC CGATCAGGGC
GGATATTTTT CAGGTATGGT GCCGGACGCT GCTTTGTCTG AAAACCCAAC TTACCAGTTG
GGTGATGAAA AAGAGGCTTA CCTGGCCAAG GCAATTGGTC TGTTAAATTC TGCGGCAATT
ACAAGTAGTA ATACAGTGGG TTCTAAAGCC GTCATGAGTG TAGGTAGCAA AACCATTGCT
CTTGACAATC AGAATTTCAA TGCACCGGTA GGGGACGGGG CAAGCTTTGT AGGGATGATA
GAAAACCGCC ATAAAGGAAG GTGA
|
|---|
| Protein sequence | MLFIMMALGA CKKSKVTPEP DPPASGSNVK QTPTTNRTEL TNDSLFLYAQ QIYYWNTALP
SYDDYVPRQY NTASTDLINY ENNLFNIVKS SGSADYIAGN SDPKYSYIED ITTRNPAAVS
AVPNSRLSVD LDGNGNDTGV MWIPFGTNNS YTIFVTVVYP GSDAEAKGVK RGWAITKING
RSFGTNYNGE YNAIYDEFAK SSVTIEGYKF SNDVQGEAFN LTLTKKSYSS SPVYVSKVIT
SGSKKIGYLA YGRFSNENNS FTALGNVFSS FAAQNVTDLV VDLRYNGGGY ISTAERLINL
IAPTTATGVM YKEYYNATLR DQKATIMKNQ PLLDDNDKVR YKNGRMMNYF DDIDYTVAGN
TYSFSKIGNL TGVSNIVFLV SRNTASASEL VINSLKPKMN VKLVGQTTYG KPIGFFPVRL
QNRYDVFYSL FETKNSADQG GYFSGMVPDA ALSENPTYQL GDEKEAYLAK AIGLLNSAAI
TSSNTVGSKA VMSVGSKTIA LDNQNFNAPV GDGASFVGMI ENRHKGR
|
|---|
| |