| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3000 |
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| Symbol | |
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| ID | 8254112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3590472 |
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| End bp | 3593036 |
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| Gene Length | 2565 bp |
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| Protein Length | 854 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 644936649 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003093260 |
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| Protein GI | 255532888 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.249213 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA CTTTACTCGT TTTCACACTA CTGGTACAAT TTTTGGCTTT AGGGGCATTA
GCTCAGCAAA CAATTAAAGG TAAGGTGATC GATTCCTTAA CAAAGGAAAC CTTACCCGGT
GCAGTGGTAA GTTTAAAAGG TGCTGGTTTA TCAACCTCGA CCTCTTCAGA TGGAAGTTTC
TCGATAAAAA AACAGGACGG AGCCAATGTA CTGGTTATTT CTTATATCGG TTATAACCGT
AAAGAAGTAG TGGTCCCTGC CGGCACAACA GATCTTGGGT CTATTACCTT GGTATCCAGT
TCAAACACGA TGGATGAGGT TATGATTATA GCCAATAACG TAGCCATTGA CAGGAAAACA
CCCGTGGCAG TTTCTACTGT AGATGCAACA AGATTGGAAG AAAAACTCAG TAATCAGGAA
TTCCCCGAAA TCTTAAAATC AACCCCAGGT GTGTATGCAA CCAGATCAGG CGGTGGTTTT
GGCGACTCCA GGATGAATTT ACGTGGTTTT CAAAGTGCCA ACGTAGCAGT GATGGTAAAT
GGGGTACCCG TAAACGATCC TGAAAGTGGA AGGGTTTTTT GGTCTAACTG GTCGGGCTTA
GGCGAAGTAA TGCGTAGTAC ACAGGTACAA AGAGGGCTTG GAGCTTCAAA AGTAGCAGTT
CCTTCTATTG GTGGTACAGT AAATATCATT ACCAAATCAA CCGATATGGC TAAAGGGGGC
TTTATTTATC AGGGATTTGG CAACAATGAT TTCAATAAAA CTACATTTTC TTATTCAACA
GGTTTAACAG ATAAAAACTG GGCATTTACC GTTTTGGGTT CAAAGCAAGG TGGAGACGGA
TGGGCTGAAG GGCTATACTA TAAAGCTTAT ACTTACTTCT TTAATGTTTC CAAGATTATC
AATGCGCACC ATACTTTATC TTTAACTGGG TTCGGCGCAC CTCAATATCA TGCGCAACGT
TTTGACCGTT TAACCATAGA AACTTACAGA GATGCACCAC AAGGTATCAA ATTCAATCCA
AACTGGGGCG TATATAATGG CAAAGACAAA ACTATTAGCG GAAACTTTTT TCATAAACCA
CAATTCTCTT TAAACCACTA TTGGACAATT GACGATAAAT CGTCTCTGTC TACTGCCATA
TATTACTCTA TAGGTACCGG AGGTAATGAG TTTGATAGTA ATTTAAGTGG CGGTGTTAAC
TTTGATGATG TTCAATACAG AAAAGCCGGA AAATATTCTC CTCTTGATTT AGACAAGATA
GCTGCCCTGA ATGCAGCAAC TACTGACGGA AAAGCGGTAG CCTATCTCCA ATCAAACCGA
AATGACCACA AATGGTATGG TATGTTAAGT ACCTACAACA GAAAAATCGG AGATAAGTTC
AATGTGCTGG GTGGAATTGA TTTAAGGTCT TACAAAGGTA TACACTACAA TTCGGTAAGG
AACTTACTTG GTGCTGAGTA TGTGTTAGAT GCGTCAAATT TAAATAATCC GGTAAATATG
GCTAAAACAG GTGATAAGAT TGGGTTTTAT AATGATGGAC TGGTAAGATG GGAAGGTGTA
TTTGTGCAAG GTGAATATAG CGATGGTCCG CTTTCGACAT TCATTTCCCT GGCCGGATCA
AATACTTCTT ATAAACGTAT TGATTATTTC CGCTATCTCA ATACTGATCC TTTGCGCGAA
AGTAGCTGGC AAAATTTCCT GGGCTATCAG GCCAAAGGTG GTGCCAATTA TAACATCAGT
GAGCAACACA ATATTTTTGC GAATTTAGGT CATTTTGAGA AAGCGCCTTT TTTCAATGCC
ATATTTATAG GTAATCAAAA CGTACCCAAT AAAGATGCAG TAAATGAAAA GATTACGAGT
TATGAACTCG GATATGGATT TAGAAGTCAG TGGTTAACTG CTAATTTAAA CTTGTACCGT
ACCCGGTGGA ACGACCGTTC ATTTACCAGA TCAATTACAG GCCAGGGTGG TGCAAGATAC
TTTGCCAACC TTGTTGGTGT TGATGCCTTA CATCAGGGGA TAGAACTGGA TTTTGTCGCA
AAACCAGTGA AAGACCTGAG TATTAATGGT ATGGTATCTT TGGGTAACTG GAAATGGAAA
AATAACCTCG CTGCAGTACA GGTGTATGAC GAAAACCAAC AACCGGTAGG TTCACCGATT
GGCCCAGTCT ATATGTCGGG TCTGAAAGTG GGTGATTCTC CGCAAACCAC TGCTGCCATT
GGTGTGAACT ATAACCTGAC AGAAGAGTTT AAAATAGGAG TGGATTATAA TTATTATGCA
AATTTTAACG CCGAATTTGA TCCTACAACC TTAACCAAAC AGGGATTAAC GCCATGGGAA
GTACCTAATT ATTCGCTGGT AGATGTCAAT GCTGTATTCC GGTTTAAACT TGGAAATTTT
AAAGCATCGC TTTTCGGAAA TGTGAACAAC CTGTTTAATG TAGAATATAT TTCTGATGGA
TATGCAAATT TCGATCCATC AACAGGTATC AGCAACGCCA GCAATTCGAC TGTATATTTT
GGAACAGGAA GAACCTTTAC TACGGGATTA AAAATTAATT TCTAG
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| Protein sequence | MKKTLLVFTL LVQFLALGAL AQQTIKGKVI DSLTKETLPG AVVSLKGAGL STSTSSDGSF
SIKKQDGANV LVISYIGYNR KEVVVPAGTT DLGSITLVSS SNTMDEVMII ANNVAIDRKT
PVAVSTVDAT RLEEKLSNQE FPEILKSTPG VYATRSGGGF GDSRMNLRGF QSANVAVMVN
GVPVNDPESG RVFWSNWSGL GEVMRSTQVQ RGLGASKVAV PSIGGTVNII TKSTDMAKGG
FIYQGFGNND FNKTTFSYST GLTDKNWAFT VLGSKQGGDG WAEGLYYKAY TYFFNVSKII
NAHHTLSLTG FGAPQYHAQR FDRLTIETYR DAPQGIKFNP NWGVYNGKDK TISGNFFHKP
QFSLNHYWTI DDKSSLSTAI YYSIGTGGNE FDSNLSGGVN FDDVQYRKAG KYSPLDLDKI
AALNAATTDG KAVAYLQSNR NDHKWYGMLS TYNRKIGDKF NVLGGIDLRS YKGIHYNSVR
NLLGAEYVLD ASNLNNPVNM AKTGDKIGFY NDGLVRWEGV FVQGEYSDGP LSTFISLAGS
NTSYKRIDYF RYLNTDPLRE SSWQNFLGYQ AKGGANYNIS EQHNIFANLG HFEKAPFFNA
IFIGNQNVPN KDAVNEKITS YELGYGFRSQ WLTANLNLYR TRWNDRSFTR SITGQGGARY
FANLVGVDAL HQGIELDFVA KPVKDLSING MVSLGNWKWK NNLAAVQVYD ENQQPVGSPI
GPVYMSGLKV GDSPQTTAAI GVNYNLTEEF KIGVDYNYYA NFNAEFDPTT LTKQGLTPWE
VPNYSLVDVN AVFRFKLGNF KASLFGNVNN LFNVEYISDG YANFDPSTGI SNASNSTVYF
GTGRTFTTGL KINF
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