| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2854 |
|---|
| Symbol | |
|---|
| ID | 8253962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 3402407 |
|---|
| End bp | 3405823 |
|---|
| Gene Length | 3417 bp |
|---|
| Protein Length | 1138 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644936500 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003093115 |
|---|
| Protein GI | 255532743 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.958759 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.16457 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATACAA TTTATACTAA GAAAATCGGT ATGCCTAAAA GGCTATACCA TAAAATCATG
CTCATTATGC GACTAACCAC CGTTATATTA ATAGCATCCC TACTGCAGGT TAGCGCATCC
AGCCTGGCCC AGAAAGTCAG TTTGCACAAA ACCAATGCAG ACTTAAAAAC TGTTTTAAAA
GAACTGAGAG GCCAAAGCGG CTATATTTTC CTGTACCGCG ACAATGTTTT AAAACAAGCC
AAACCGGTAA ACATCAAGGT AAGCCGGGTT GAAGTTAAGG AAGTGTTGGA TCAGATTTTT
GAAAAGCAAC CGCTAACTTA TAGTGTAAAT GAAAACACGA TAACCATTCA GCCCAAAGAG
CCTTCCTTTC TGGAAAAGGT GGTGGATGCC CTTACTCCTC CTGCTGATAT CAGGGGTATC
ATTTTGGATG ATAAAGGCCA GCCGCTTGCA GGGGCGAGTG TAAAGGTAAA AGGTACTTCT
AAAACAGCTA CTACAAATAA CAAAGGCGAA TTCTTCTTAC AGGGAGTGAA TGAAAATTCT
GTGTTGCTGA TTTCTTATAT AGGCTATCAG ACAAAGGAAA TAGCGGCAAG TTCTAGCCTG
AGCGAAATTA GATTGGAATT GAGTACTTCA AAGCTAGATG AAGTACAGGT GATTGCTTAC
GGTACGACAA CACAAAGGTA TAATGTGGGG TCGGTAAGTA AGGTCACCGC AGAAGAGATA
GCCCAACAGC CAGTTATGAA CCCTTTGGCA GCTTTAGCTG GAAGAGTTCC AGGTCTAGTA
ATCACGCAAA CCAGTGGTCT TGCAGGTTCT TCTTTTAAAG TGCAGATCAG AGGGCAAAAT
TCGCTAGCAC CAACTGCTGG CGGTGTTCCG CCATTAGACA ATCCATTAAT TGTGGTAGAT
GGAGTCCCTT TTGCAGCAAA TAATGCCAAT GTCAATCAAA TGACTTCAGT TATGTCGCCC
CAAGGTGGTG GATTTCTTAA TGACTATGGA GGAATTAGCC CACTCAACAG CATTAATCCT
AACGATATTG AAAGCATTGA AGTACTAAGA GATGCTGATG CCACTTCTAT TTACGGGTCT
AGGGGCTCTA ATGGGGTTAT TTTGATTACT ACAAAGAAAG GCAAGCCTGG GAAACTCAGC
TTGCAAGGTA ATGTATCTAA CGGTGCTAGT AAAATAACTC GAACATTAAA ATTGATGGAT
ACAAAACAGT ATCTGGAAAT ACGAAGGGAA GCTATAATGA ACGATAATGG TCTGAAAGGC
GTTTTCCTAA ATCCACAATA CGCTAATTTT TTTCCTGATT TTTATGTTTT TGATACCACT
AGAAATGTAG ACTGGGTGGA TAAATTTATC GGAAATACGG CGTCAACTAC AGATGCCAAT
ATATCTACTT CGGGAGGAAG TGCCGGTACG AGATTTATGT TGGGTAGTAC TTTCCATAGA
GAAACAAGCA TTTTTCCCGG AGATCTAGCC TATCGAAGAA ACACCCTGAA CGCCAGTTTT
CATCACAATA CTATGGATAA TCGGCTTTCG TTTGATTTCT CTGTAAACTA CGCAATTGAC
ATAAATAATT TGGTATCAAA TAAAGAAGCA TTAAAGTCAA TTACTTTGAC GCCGAATTTC
CCTGATTTGA TAGATCCTCA AGGAAATCTG ATATGGAATT ATAAAGGAAT TTCCTTTGCA
GCCACGGCAG GTATTATTAA TACAAATCCA TTCCGGTATT TGAAAACAAA ATATTCTGCA
GCAACCGAAA ATCTTTTAAG TAGCTTTCTG GTCTCATATC AATTGTTGTC GGGATTGGCT
ATCCGTTCTA GTTTTGGGTA TAATACGCTG TTGGCGGAAG AAATTTCACA AGATCCGATT
ACCGCACGAC CACCTGGAAA CAATGTTACT GGAAGTGCTT CCTTCGGGAA TAACAAGTTT
AAGACCTGGA TTATAGAGCC GCAACTTGAA TATAAAAAGG ACATCGGAAG TGGTAAATTA
ACTTTATTGA TTGGCGGGAC TATACAAAAG AATCTGAACA ATTCTTCTAT AATAAACGCA
TCTGGTTATG CAAACGATGC TTTCCTTGGG GCTGTTTCAG GAGCGGCCAC TACATCAGCT
TCCGGCGGGT CAACGGAATA CAAATACTCT GGGATATTTG GGAGGATGAA TTATATATTA
GCAAATAAAT ACATTATTAA TTTAAGTGGA CGAAGAGATG GATCGAGCAG GTTTGGTCCG
GGAAGACAGT TTGGTAATTT CGGGTCAGTA GCTGGCGGGT GGCTTTTTTC TGAAGAGTCA
GTAATCAAAG AGGGGCTGCC TATTTTATCG TATGGAAAAT TAAGGGCTAG TTATGGAACG
ACGGGAAATG ATGCCATTGG TGATTATCAA TACTTGGCCA CTTGGTCACC AATAGCTAGC
AGTGTATACC AAGGGTCAGC TGGCTATATG CCTAATAACC TATTTAAACC TGATTACAGT
TGGGCAGTAA CAAAAAAATT AGAATTTGGA TTTGAACTGG GATTAAACAA AGATAAAATC
TTTTTAAATG CCGATTGGTA CAGGAACCGA TGTGGAAACC AGTTGGTCAA TTATCAATTG
CCAGCTCAAA CAGGATTTGC CAATGTGACG CAGAATTTTC CGGCTTTGGT CGAAAATTCG
GGATGGGATT TTCAAATAAA TACTACAATA TTTAAAGTCA AAGAGTTTAT TTGGAAGTTG
GCGGTAAATC TAACTGTACC AGAAAACAAA TTGACTGCAT TTCCCGGCAT CGAAACATCG
TCATATGCCA ACACTTACTT TGTAGGTCAT TCTTTAAGCG TTTTAAATAA GGTACTGTAT
TCAGGGGTAA ATCCTACAAC AGGTCTATTC GAATTTCAAT CAGTTAATGG CCTTACAAGT
GCCCCGGATC TTAATAGGGA TCGCCATATC ATTGGTGACC TTGATCCTAA ATTTTATGGA
GGGATGAGAA CAAACTTTTC TTTTAAGGGA TTTCAATTGG ATGTCTTTTT TGAATTTAGA
AAACAAACAG GTCTCAACTA TCTTTATTCA ATTTATGACG GTGGTGGAAT TGGTCGTGAC
TCAAGAAATT TACCAGAACT TTTGTTATCT AGATGGCAAA AGCCCGGGGA TCAGTCTGAC
ATTCAGAAAG TATCCACAAG CTTTTCTGAC GATACATACA TTCCCTCCTC ATCCTTTAAG
TCATCGAGCG GAGTTTACAG TGATGCATCT TTTATTCGGT TTAAAACGGC CTCACTTTCG
TATAGTTTTA ATGAGCGGTT GCTAAAAAAA ATAAAAATGA ATGGCTGCCG CTTGTATGTA
AATGCTCAGA ATCTCTTCAC GATAACAAAA TATAAAGGTG GTGATCCAGA GACTCAAAAT
TTATATGGAA TCCCCCCCTT AAAAACAGTT GTTGCTGGAG TTCAATTTTC ATTTTAA
|
|---|
| Protein sequence | MYTIYTKKIG MPKRLYHKIM LIMRLTTVIL IASLLQVSAS SLAQKVSLHK TNADLKTVLK
ELRGQSGYIF LYRDNVLKQA KPVNIKVSRV EVKEVLDQIF EKQPLTYSVN ENTITIQPKE
PSFLEKVVDA LTPPADIRGI ILDDKGQPLA GASVKVKGTS KTATTNNKGE FFLQGVNENS
VLLISYIGYQ TKEIAASSSL SEIRLELSTS KLDEVQVIAY GTTTQRYNVG SVSKVTAEEI
AQQPVMNPLA ALAGRVPGLV ITQTSGLAGS SFKVQIRGQN SLAPTAGGVP PLDNPLIVVD
GVPFAANNAN VNQMTSVMSP QGGGFLNDYG GISPLNSINP NDIESIEVLR DADATSIYGS
RGSNGVILIT TKKGKPGKLS LQGNVSNGAS KITRTLKLMD TKQYLEIRRE AIMNDNGLKG
VFLNPQYANF FPDFYVFDTT RNVDWVDKFI GNTASTTDAN ISTSGGSAGT RFMLGSTFHR
ETSIFPGDLA YRRNTLNASF HHNTMDNRLS FDFSVNYAID INNLVSNKEA LKSITLTPNF
PDLIDPQGNL IWNYKGISFA ATAGIINTNP FRYLKTKYSA ATENLLSSFL VSYQLLSGLA
IRSSFGYNTL LAEEISQDPI TARPPGNNVT GSASFGNNKF KTWIIEPQLE YKKDIGSGKL
TLLIGGTIQK NLNNSSIINA SGYANDAFLG AVSGAATTSA SGGSTEYKYS GIFGRMNYIL
ANKYIINLSG RRDGSSRFGP GRQFGNFGSV AGGWLFSEES VIKEGLPILS YGKLRASYGT
TGNDAIGDYQ YLATWSPIAS SVYQGSAGYM PNNLFKPDYS WAVTKKLEFG FELGLNKDKI
FLNADWYRNR CGNQLVNYQL PAQTGFANVT QNFPALVENS GWDFQINTTI FKVKEFIWKL
AVNLTVPENK LTAFPGIETS SYANTYFVGH SLSVLNKVLY SGVNPTTGLF EFQSVNGLTS
APDLNRDRHI IGDLDPKFYG GMRTNFSFKG FQLDVFFEFR KQTGLNYLYS IYDGGGIGRD
SRNLPELLLS RWQKPGDQSD IQKVSTSFSD DTYIPSSSFK SSSGVYSDAS FIRFKTASLS
YSFNERLLKK IKMNGCRLYV NAQNLFTITK YKGGDPETQN LYGIPPLKTV VAGVQFSF
|
|---|
| |