| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2756 |
|---|
| Symbol | |
|---|
| ID | 8253864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 3257735 |
|---|
| End bp | 3258895 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644936404 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_003093019 |
|---|
| Protein GI | 255532647 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.196216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGACA AAATTAGTTT AAAAGGAATA ACATGGAACC ACAGCCGTGG CTTTACCCCA
ATGGTAGCTA CAGCACAGCG TTTTTCAGAG TTGAATCCAT CAGTAGAAAT TATATGGGAG
AAAAGAAGTT TACAGGCTTT TGCTGATTTT TCCATACAGG AGCTGGCCGA AAGATTTGAT
CTTCTGGTAA TTGATCATCC CTGGGCAGGT TTTGCCGCCA AAACAGGATC CATTCTTCCG
CTGGACAAAT ATTTTACAAA GGATTATTTA AAAGACCAGG AAGACAATAC AGTAGGACAT
TCTTATGAGA GTTACAGTTA CGACGGACAC CAGTGGGCAC TCCCGATAGA TGCGGCGACA
CCCGTAGCGG CCTGCCGACC GGATTTACTG GAACAGCATG GCCTTGCTTT GCCAAAAACA
TTTGAGGATT TACTGAACCT GGCCGATAAA GGCCTGGTGG CTTTTGCGGG GATCCCCATT
GATGTACTCA TGAATTTTTA TACATTTTGC TGCTCGCTGG GCGAAGATCC CTGCCAGCAG
GAGGACCTGA TCATATCCAG TGATATTGGT ATTGCCGCAC TCAGGATGTA CAGAGAACTG
GCTTCAAAGA TTCATCCCGA TAATTTTAAA AGAAATCCAA TACAGACATA TGAAGCCATG
ACCTTAGGTG ATGATATTGC TTATTGTCCT TTTGCTTATG GGTATTCCAA TTATTCCAGA
AAAGGTTACG CCCGCAAACT GCTGCATTTT CATGACATGA TCTCTTTGAA TGGGCGCAGT
AACCTGCGCA GTACGCTTGG AGGAACCGGC CTGGCCGTAT CTTCAGCTTG TAAGCATATA
GAAATGGCTG TAAAATATGC AGGATATGTA GCTTCGCCAT TCTGGCAACA GGGGCTTTTC
TTCGAAAATG GTGGTCAGCC CGGCCACTTA AGTGCCTGGA CAGATGCAGA AGTGAACCAC
AGGTCGAATG ATTTTTTTGT GAATACGCTG CCAGCACTGC AACGGGCTTT CTTGCGACCG
CGTTACCACG GGCACATGTT TTTCCAGGAC CATGCCGGGG ATATCGTGCG TGATTACCTC
ATGATGGGAG GATCTGAAAT ATCAGTACTG GAAAAGCTGA ATAGTTTATA TGTAGAATCC
AGAACCCTGC AGTTGTCATG A
|
|---|
| Protein sequence | MSDKISLKGI TWNHSRGFTP MVATAQRFSE LNPSVEIIWE KRSLQAFADF SIQELAERFD
LLVIDHPWAG FAAKTGSILP LDKYFTKDYL KDQEDNTVGH SYESYSYDGH QWALPIDAAT
PVAACRPDLL EQHGLALPKT FEDLLNLADK GLVAFAGIPI DVLMNFYTFC CSLGEDPCQQ
EDLIISSDIG IAALRMYREL ASKIHPDNFK RNPIQTYEAM TLGDDIAYCP FAYGYSNYSR
KGYARKLLHF HDMISLNGRS NLRSTLGGTG LAVSSACKHI EMAVKYAGYV ASPFWQQGLF
FENGGQPGHL SAWTDAEVNH RSNDFFVNTL PALQRAFLRP RYHGHMFFQD HAGDIVRDYL
MMGGSEISVL EKLNSLYVES RTLQLS
|
|---|
| |