| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2197 |
|---|
| Symbol | |
|---|
| ID | 8253303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 2528203 |
|---|
| End bp | 2529195 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644935846 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_003092463 |
|---|
| Protein GI | 255532091 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.608202 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAA AAAAGGTATT GATTACCGGT GCGAGCGGAT TTGTGGGTTA TCATTTGATT
AAAGAAGCTT TAAAAGCAGA TCTTGAAGTT TATGCGGCTG TACGCAAAAG CAGTGATGTG
GCACACCTGA AGGATTTTGA CATCAGGTAT ACAGACCTGG ATTATACAGA TGTGGAGGCT
TTGAAAGCAG AGCTGGAAGA AAAGCAATAC CATTACATCA TCCATGCGGC GGGTACCACC
AAGGCCAAGA CCAAAGCGGT ATATGAGGAG ATCAATGCAG GTTATACCAG GAACCTGGCC
ATTGCGGCAA GTACGGCCAA TATCAGTTTA GAGAAATTTG TTTTTGTAAG CAGTTTGGCT
GCACTGGGGC CGCTAAAAGA ACTATCGGAC GAAATCCAGG ACGACAGTGC AGGACAGCCG
GTAACCAATT ATGGCGCCAG TAAGCTGCTG GCCGAACAGT ACCTGGCAGG CTTTGATACC
TTGCCTTTAG TGACCATCCG GCCTACAGCC GTTTACGGGC CCAGGGAAAA AGACCTGTTT
ATTTTGTTTG ACAGTATCAA TAAAGGGCTT GAGCCACATA TTGGCCGTTT TGAGCAGCAG
CTGAGTTTTG TGTATGTAAA AGACCTGGCC AGGGTGATTA TAAAAGCCCT GCAGCTTCCT
TTGGTCCGCA AAGCCTATAA CATTTCTGAT GGGGAGATTT ATGACAGATA CGCCCTGGCC
AATTACACCA AAAAGGCCTT AAACAAAAAA ACCTTTAAGT TCCATTTACC TGTACCCCTG
GTAGCCTTTA TGGCAGCTGT GATGGACCTT ATTTATGCAG GCAGTAAAGA TACACCCACT
TTAAACAAAG AGAAGATGGC GGAACTGACC GCTGTTAACT GGGCCTGCAG CATAAAGAAT
GCCGAGGCCG ACCTGGCTTA TGTACCAGAG TTCAACCTGG AAAAAGGGAT AATGCAGACC
CTTAAATGGT ATAAACTGAA CAACTGGCTG TAA
|
|---|
| Protein sequence | MSKKKVLITG ASGFVGYHLI KEALKADLEV YAAVRKSSDV AHLKDFDIRY TDLDYTDVEA
LKAELEEKQY HYIIHAAGTT KAKTKAVYEE INAGYTRNLA IAASTANISL EKFVFVSSLA
ALGPLKELSD EIQDDSAGQP VTNYGASKLL AEQYLAGFDT LPLVTIRPTA VYGPREKDLF
ILFDSINKGL EPHIGRFEQQ LSFVYVKDLA RVIIKALQLP LVRKAYNISD GEIYDRYALA
NYTKKALNKK TFKFHLPVPL VAFMAAVMDL IYAGSKDTPT LNKEKMAELT AVNWACSIKN
AEADLAYVPE FNLEKGIMQT LKWYKLNNWL
|
|---|
| |