| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2189 |
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| Symbol | |
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| ID | 8253295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2512997 |
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| End bp | 2515570 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644935838 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_003092455 |
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| Protein GI | 255532083 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.824425 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAAAA ATTTATTAAT AGTAGAGTCA CCTGCAAAAG CAAAAACCAT CGAAGGGTAT
TTAGGTAAGG ATTTTTTAGT TAAATCGAGT TACGGGCACA TCCGTGATTT GGTTAAAGGG
GATATGGCGA TTGATACTGC CAATAATTTT GCCCAGACCT ATGAAGTGCC GTCCGATAAG
AAGCAGGTGG TTGCAGAACT TAAGAAATTG GCCAAAGACG CAGAAATGGT ATGGCTCGCA
TCCGATGAGG ACCGCGAAGG AGAAGCCATA TCCTGGCATT TGTATGAAAC CCTGGGACTG
AAGGAAAATA AGACCAAAAG GATTGTTTTT CATGAGATCA CCAAGCCCGC CATATTAAAA
GCAATAGAAA CCCCGCGCAG CATAGATTAC AACCTGGTTA ATGCCCAGCA GGCTCGCAGG
GTGCTGGACA GGCTGGTAGG TTTTGAACTT TCGCCGGTAT TATGGAAAAA AATTAAGCCT
TCTTTGTCGG CCGGGCGTGT ACAGTCTGTC GCCGTTCGCC TCATTGTCGA CAGGGAACGT
GAAGTCAATA AATTCAATGC TGCTGCAGCA TTTAAAATTA CTGCCGAATT TGTTACCGGT
AATGGAAAAG AGCTGGTTAA AGCAGAGCTG CCACAGCGTT TTGAAAAAGA AGCTGATGCA
GAAAAGTTTT TGAACGATTG TGCAGGGGCC GGTTTTTCGG TCGACAGCCT GGAAACAAAG
CCCGCCAAAC GTAATCCTGC AGCGCCTTTC ACCACCTCTA CCCTACAGCA GGAAGCTTCG
CGGAAGCTGG GCTATTCGGT AAGCAGGACG ATGCAGATTG CTCAAAGGCT ATACGAAAGT
GGAAGAATAA CCTATATGAG GACAGATTCG GTGAATTTGT CGGAAACCGC TTTACAGGCT
GCGGCCAGCG AAATCAGGTC GGCCTGGGGC GATAAATACC ATCAGCCAAG AACTTATAAA
ACAAAATCTG CTGGTGCACA GGAGGCACAC GAGGCCATCC GCCCTACTTA TTTCAACCAG
CATACCGTGC CGGGCGACAG TTCGGAGCAA CGCCTGTATG AGCTGATCTG GAAAAGAGCC
ATTGCCTCAC AGATGAGTGA AGCGCTGTTT GAAAAAACTA CCGCACAGAT CGGTATCAGC
ACCCGTAAGG AACAGCTGAT TGCAGAAGGT GAAGTGTTGA AATTTGATGG CTTTTTAAAA
GTATACCTGG AATCTTCGGA TGAAGAGGAT GCGGAAGATT CGGAGGGCAA CAATATGCTT
CCAGCACTTT CAAGGGGACA GGCGCTGACT TTAAAAGTGA TGAATGCAAC GGAAAGGTTT
TCGAGACCGC CGGCAAGATA TACAGAGGCT TCATTGGTTA AGAAGCTGGA AGAGCTGGGT
ATAGGCAGGC CTTCTACTTA TGCGCCAACC ATCTCTACCA TCCAGAACCG CGGATATGTG
GTTAAGGAAG ACCGTGATGG CCGCCAGCGT AGCTTTGCAG CCATAGAACT GAGCAATGGT
TCGGTAACCA AAAAGACAAA AACAGAAATT ACGGGTGCTG AAAAAGGCAA GCTCTTCCCT
ACGGACATTG GCGAGGTGGT GAACGATTTC CTTGTAGAAC ATTTTAAAGG TATTGTTGAT
TTTAACTTTA CAGCGAATGT AGAGAAGGAG TTTGACGAGA TTGCGCAGGG CCTGCAGGAA
TGGACAAAAA TGCTCCACTC CTTTTATACG CCCTTTCACC TGGAAGTAGA AAATACGCTG
GAAACGGCCG ACAGGGCCAA TGGAGAGCGC TTGCTGGGAC TGGACCCGGC AACTGGTAAA
AATGTTTACA CCAAGGTTGG CCGCTTTGGC CCGCTGGTAC AGATCGGTGA AAATGACGAT
GAAGAAAAAC CACGTTATGC CAGTTTGTCC AAATCGCAAT CGGTAGGTAC AGTTACACTG
GAAGAGGCTT TAGAGCAGTT TAAACTTCCT TTTTCTTTAG AAGATTATCA GGGTAAAGAA
GTTTCTGTTG GAGTTGGCCG TTTTGGGCCT TATGTGAAAT GGGGCGATGC CTTTATTTCT
GTACCAAAGA ACGAAGACCC ATTGTCGATA GACCAGGCGC GTGCCATAGA GATCATTGGC
GAGAAAATTA CGGCCGATGC ACCGGTGGCA CATTACCAGG GCATGCCGGT TACCAAGGGT
ACAGGCAGGT TTGGGCCTTT TATCAAATGG AACGACCTGT TTATCAATGT GCCAAAGGCC
TATAATTTCG ACAGGCTTTC GCAGCAGGAT ATTGAGGAGC TGATCGGTAA AAAGATCGAA
AAAGAGGCCA ACAGGTTTAT CCAGCAATGG CCTGCCGAAA AGATCGCGAT CGAAAATGGC
AGATGGGGAC CCTTTATCCG TTTTGGCAAG GAAATGCTGA AATTGCGTAA AAACCCGGCC
ACGAATGATA AGTATACCCC TGAGGAACTG GCATCAATTG CTTTGGATGA AGTGAAGAAG
CTGATTGTAG AGCAGGTGCC AAATGCATTT GAACCTAAAA AGAAAGCCGC TGCAAAAAAA
ACGGGAGCTG CGAAGAAAGC ACCTGCAAAA AAGAAAGCAG TAGCAAAGAA GTAA
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| Protein sequence | MAKNLLIVES PAKAKTIEGY LGKDFLVKSS YGHIRDLVKG DMAIDTANNF AQTYEVPSDK
KQVVAELKKL AKDAEMVWLA SDEDREGEAI SWHLYETLGL KENKTKRIVF HEITKPAILK
AIETPRSIDY NLVNAQQARR VLDRLVGFEL SPVLWKKIKP SLSAGRVQSV AVRLIVDRER
EVNKFNAAAA FKITAEFVTG NGKELVKAEL PQRFEKEADA EKFLNDCAGA GFSVDSLETK
PAKRNPAAPF TTSTLQQEAS RKLGYSVSRT MQIAQRLYES GRITYMRTDS VNLSETALQA
AASEIRSAWG DKYHQPRTYK TKSAGAQEAH EAIRPTYFNQ HTVPGDSSEQ RLYELIWKRA
IASQMSEALF EKTTAQIGIS TRKEQLIAEG EVLKFDGFLK VYLESSDEED AEDSEGNNML
PALSRGQALT LKVMNATERF SRPPARYTEA SLVKKLEELG IGRPSTYAPT ISTIQNRGYV
VKEDRDGRQR SFAAIELSNG SVTKKTKTEI TGAEKGKLFP TDIGEVVNDF LVEHFKGIVD
FNFTANVEKE FDEIAQGLQE WTKMLHSFYT PFHLEVENTL ETADRANGER LLGLDPATGK
NVYTKVGRFG PLVQIGENDD EEKPRYASLS KSQSVGTVTL EEALEQFKLP FSLEDYQGKE
VSVGVGRFGP YVKWGDAFIS VPKNEDPLSI DQARAIEIIG EKITADAPVA HYQGMPVTKG
TGRFGPFIKW NDLFINVPKA YNFDRLSQQD IEELIGKKIE KEANRFIQQW PAEKIAIENG
RWGPFIRFGK EMLKLRKNPA TNDKYTPEEL ASIALDEVKK LIVEQVPNAF EPKKKAAAKK
TGAAKKAPAK KKAVAKK
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