| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2042 |
|---|
| Symbol | |
|---|
| ID | 8253146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 2359172 |
|---|
| End bp | 2360032 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644935690 |
|---|
| Product | protein of unknown function UPF0187 |
|---|
| Protein accession | YP_003092309 |
|---|
| Protein GI | 255531937 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3781] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0364314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00398813 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATAAACT ATAATCCGAA AGACTGGGTA ACCTTTATAT TTCATGTGCA CAAGGCAGAT
ACCATCCGTA CGTTATGGCC ATTGATGATC AGTGTGGCGG TATTTTCAGG TATAATTGCT
TACCTCGAAC TGAACTATCT GAAACTTGCA GAAACGACTT ATGTTAAAAA TATAGGCATG
ATGCACAATC TCCTGGGTTT TGTAATCTCG ATGTTGCTGG TATTCCGCAC CAATACTTCA
TATGACCGTT GGTGGGAAGG GCGCAGGTTT TTAGGGGCGC TGACCAATGT GAGCCGGAAT
TTTGCCATTA AGATCAAATC TTTAAAACTA TCTGAAGCGC ACAATGAGTT TTTTGATTAT
GCCATTGCCA AATATGCTTT TGCTTTAAAA GAGCATTTAA GGGAAAAACA GTATTTCGGA
AAAAACAGTC TGCTGATCGA AGTAGATGGC GGAAAACATA TTCCCAATCA GGTGGCTGCA
AGTATTTCAT CCAGGGTATT TGAGCTGCAG GCAGATGGGG AGATCAGTCA GGAACAGCTG
ATTATACTTA ATGCAGATGT TCAGCAATTT ACAGATATAT GTGGTGGTTG TGAGCGGATT
AAGCGTACAC CTATTCCGTA TTCCTATAGT GCATTTATCA AGAAGTTTAT TTTCATTTAT
GTGATCACCC TGCCTTTTGG CTGGGTGTTT AGTCTGGGTT ATTTTGTAGT GCCTATTGTT
CCTTTTATCT TATATGTACT GGCCAGTCTG GAACTGATCG CAGAGGAAAT AGAAAACCCT
TTTGGCGAAG ATGCCAATGA CCTTCCTGTG GATGAGATAT GCAACAATAT TGAAAAGCAT
GTTGGGGAGA TCTTAAAATA A
|
|---|
| Protein sequence | MINYNPKDWV TFIFHVHKAD TIRTLWPLMI SVAVFSGIIA YLELNYLKLA ETTYVKNIGM
MHNLLGFVIS MLLVFRTNTS YDRWWEGRRF LGALTNVSRN FAIKIKSLKL SEAHNEFFDY
AIAKYAFALK EHLREKQYFG KNSLLIEVDG GKHIPNQVAA SISSRVFELQ ADGEISQEQL
IILNADVQQF TDICGGCERI KRTPIPYSYS AFIKKFIFIY VITLPFGWVF SLGYFVVPIV
PFILYVLASL ELIAEEIENP FGEDANDLPV DEICNNIEKH VGEILK
|
|---|
| |