| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2028 |
|---|
| Symbol | |
|---|
| ID | 8253132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 2337242 |
|---|
| End bp | 2338198 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644935676 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_003092295 |
|---|
| Protein GI | 255531923 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.30621 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00368747 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGGTT CATTGCTATA CAGAGTGAAA AATAAATTTG CTCGCCGTGG TGTAGTATTG
ATGTATCACC GGATAGCAAA ACCCCTATCA GACCCTTGGG ACCTCGCGGT TAATCCTAAA
CATTTCGAAG AACATTTAAA AGTGTTAAAA GCCTACAATG TAATTTCTGT AGATGAATTG
GCAGATATTC TAACTCGAAA AAGCAAAATG CCAGCCAAAA CTGTAGCTGT TACTTTTGAT
GATGGTTATC ACGACAATTA TTTAGCAGCT AAATCTTTGC TTGAAAAATA TGATATTCCG
GCAAGTTTTT TTATACCTAC AGACGCTATT GGAAAACAAA CGGAATTCTG GTGGGATGCC
CTAGAACGTA TTTGTTTGCA ATCACCTCAC CTACCCGATA AATTAATACT CGGGCAGCAA
GATGAGATTT GGAATATTGG CAAGGCTGAC AATGGCAATA CGCTAAACCC GCTTGATCTG
TATCTCAAAC TTTGTGATAT GGTTAGAAAA ATGCCTTCAA CACAACACCA GGCCTTTATT
GAAAGTCTTG AAGTCTGGGC AAACAATGCC AATAAAAGGC CGGAATATTT TACAATGGAT
CAAAAAGAAT TGTTAGACCT GCAATCAAGC CCGCTTTTTA CTATTGGCGC ACATACGATG
ACACATCCAT ACTTGCCCTA TTTTTCTTAT GAATATCAAA AAAATGAAAT ACAAGGTGGC
ATTAATTTTT TAAAAGAATT GACAGGCAAC TCCATTAATT ATCTAGCTTA TCCACATGGC
GGTCACAATC AGGACACTTT AGCGATTTTA CCAGATTCCG GTATAGAGCT GGCATTCACC
ACGCATGCTC AGCATTTCAC AACAGATACC AATAAATATG CTATCCCTCG CTTTCAGATT
AAAAACTGGG ATGCGGCTAC ATTTGCCTTT CACCTTAACA ATTGGATAAA AAGTTAA
|
|---|
| Protein sequence | MLGSLLYRVK NKFARRGVVL MYHRIAKPLS DPWDLAVNPK HFEEHLKVLK AYNVISVDEL
ADILTRKSKM PAKTVAVTFD DGYHDNYLAA KSLLEKYDIP ASFFIPTDAI GKQTEFWWDA
LERICLQSPH LPDKLILGQQ DEIWNIGKAD NGNTLNPLDL YLKLCDMVRK MPSTQHQAFI
ESLEVWANNA NKRPEYFTMD QKELLDLQSS PLFTIGAHTM THPYLPYFSY EYQKNEIQGG
INFLKELTGN SINYLAYPHG GHNQDTLAIL PDSGIELAFT THAQHFTTDT NKYAIPRFQI
KNWDAATFAF HLNNWIKS
|
|---|
| |