| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1964 |
|---|
| Symbol | |
|---|
| ID | 8253068 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 2267131 |
|---|
| End bp | 2268318 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 644935615 |
|---|
| Product | cell wall biogenesis glycosyltransferase |
|---|
| Protein accession | YP_003092234 |
|---|
| Protein GI | 255531862 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000036966 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTTATTA TACTGATATT ATTTATTGTA TTGGGATCGA TTATAATTAT TCATTTGCTA
TTTCCAGCTT TTCTGTTGTT GATATCATCA TTGTTCAGAA TTAAAAGTAA AAAAAATGCT
AACCCTGATA CAAACGGTGC TGGAGATTAT GCAGTTATTG TAACAGCATA CGAAGACCTC
TCTTTGATAC ATGCTGTTGT CGATTCCATC CTTAAAGTTG ATTATGGTAA TTTTATAATT
TATATAGTTG CAGACAATTG CGATGTTTCT ACACTTAATT TCGCTGACGA AAGAATAGTT
GTTTTAAGAC CCACCGAAGT ACTATCCAGC AATGTCAAAT CCCACTTCTA TGCCATTAAT
AATTTTAAGA GACAACATGA TAGAATAACG ATTATAGATA GCGATAATTT AGTGCAATCT
TCTTATTTTG TGGAGCTAAA CCATATTTTT GATTTGGGCT ATCATGCGGT TCAGGGAGTT
CGGGAGGCCA AAAATTTAAA TACAAGCCTG GCCTGTTTAG ATGCTGCAAA TGACATATAT
TACAGATATG CAGATAAGGA GTTATTAACC TTGGCAGGTT CTTCAGCATC TTTATCAGGT
TCCGGAATGG CATTTTCTAC TGAACTTTAT AAAGAATGTA TGTTAAAACT TGATGCCAGC
GGTGCAGGTT TTGACAAAAT TTTACAATAC GAAATTGTGA TTCGAAAACT TAAGATCGCA
TTTGCTAAAA AAGCAATCGT ATATGATGAA AAGACATCTA AATCTGATCA ATTGGTTAAG
CAAAGGGCCA GATGGATAAA TACCTGGTTT AAGTTTTTTA AACTTGGTTT AAAGATGATG
TTATCGGGAG TAGTAAATAG AGATTGGAAC CAATTCTTAT TCTCAATTAT GCTTGTAAGG
CCACCATTAT TTATTCTTTT GTTTCTTTCT TTGTTATGGT TTGCAATTGG GTTATTGATT
GTTCCCGAAC TAAGTTTAAT TATTGTGATT TCCTCTTTTA TATTTGTTTT CACTTTTATG
AAATCATTGA GTCATTTTAA GGCTGACAGA AGAATTTATC AATCTTTAAA GCGTATCCCA
ATATTTATAT TTTTTCAGGT ACAAGCGCTT TTAAAGGCCA AGAAAGCAAA CAAACTCTCT
GTGGCAACGA AACACGACCA TAATACAACT ATAAATGATC TGGATTAA
|
|---|
| Protein sequence | MFIILILFIV LGSIIIIHLL FPAFLLLISS LFRIKSKKNA NPDTNGAGDY AVIVTAYEDL
SLIHAVVDSI LKVDYGNFII YIVADNCDVS TLNFADERIV VLRPTEVLSS NVKSHFYAIN
NFKRQHDRIT IIDSDNLVQS SYFVELNHIF DLGYHAVQGV REAKNLNTSL ACLDAANDIY
YRYADKELLT LAGSSASLSG SGMAFSTELY KECMLKLDAS GAGFDKILQY EIVIRKLKIA
FAKKAIVYDE KTSKSDQLVK QRARWINTWF KFFKLGLKMM LSGVVNRDWN QFLFSIMLVR
PPLFILLFLS LLWFAIGLLI VPELSLIIVI SSFIFVFTFM KSLSHFKADR RIYQSLKRIP
IFIFFQVQAL LKAKKANKLS VATKHDHNTT INDLD
|
|---|
| |