| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1856 |
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| Symbol | |
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| ID | 8252960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2146284 |
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| End bp | 2148662 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644935507 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003092126 |
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| Protein GI | 255531754 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.693128 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.812872 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAGAA CTTGCCTGCT TGTCTTTGTC GTTTTGCTCG GTTTTGGCAA AGCTGTCGCA
CAGCCCCTGA TAAAAATATC GGGGCTGGTT ACAGATGAGT TGGGTAAATC CTTACAGCAG
GTAACTGTTA CTGTAATAGG ACAAAGCCAG TCTACCATAA CTGACGAACA GGGAGCCTAT
AACATCTATT CTAAAAGTAA AATATTTACC CTGAAATATA CGCTGTTGGG ATATAACACC
ATATTGGTCA GTATCAAACA GGACAAGGCC GGAAGGGTTA CACAACATGT TGTAATGCGT
ATAAATCCAA ATGAACTGGA ACAGGTGACC ATTACCAATA AACAAAACCA GCTGAGCAAC
AGTACGCTCA TTAATCTAAC GGATGCGGCT GCTATGCCTT CGGTATCGGG AAATTTCGAA
GCTGTTTTAA AAACTTTACC AGGCGTATCA CCCAATAATG AGCTGAGCGC GCAATATAGC
GTGCGCGGTG GTAGTTTTGA CGAGAACCTG GTGTATGTTA ACGATGTAGA GATCAGCAGG
CCTGTGCTGG TTCGCAATGC ACAACAGGAG GGCCTGAGCT TTATCAATAC TGATCTCCTG
AGTTCAGCAA AGTTCTCGGC CGGGGGATTT GAAGCCAGAT ATGGCGATAA GCTGTCCTCT
GTACTGGATG TAAAATATGA CAGGCCCGAC AGCAGTTCGG CTGCAGTAAG CGCTGGCTTG
CTTGGCCTGG CATTTAGTTC AAAAATTGTA AGCCCGAACA GCTACCTGCT TACCGGAATA
CGGTACAAGA ACAATACTGG AATATTGAAC AGCCAGGACA ACAAGGGGGT TTATACACCA
AGTTTTACGG ATGTGCAATT GCTATATAAT TATAATTTAT CGTCAAGGTT CAGTTTAAGT
TTGCTGGGCA ATTACAATAG TGGCAGGTTT AAACTGATCC CGGAAAGCAG GGAAACTGAA
TTTGGTACTG CCGATACAAA ATTACGTCTG AATGTAGATT ATGAGGGGGA AGAAAAGGAC
AATTACCAGT CGGCCGGTGC TGCAATAACC TTAAAATTTA CCCCCAGGCC AGATTATGTG
ATCAAATGGA TCAGCAGTTA TTTCAAAACA GACGAAAAAG AGCACATTGA CATAGCGGGC
TGGTATTTGT TTGACAAAGA TGATGGTCCG TCCACTTCAA AGGAAAGCAG TATAGGTGGT
TACATCAATT ATGCCATGAA CAAGCTTACC TCACAAAATT TTAGTACAGA ACTGAAGGCC
GACCAGACCT TTAAGAACCA TACTTTTTCC TGGGGCCTGA GGTTCGAAAA CAAGGATTAC
AACGATGACC TGAATGAGTA CAGCCTGATT GATTCAGCTG GTTACATCGC CAATCAGCAG
GTACATAATT TTTACCAGAA CAATAGTGTA GTTGTTAAAA ACAAGCTGAC TATTCAGTAC
TACACGGCTT ATATGCAGGA CAGTTACCGC TTGTCGGCCA ATACGGACCT GCAACTGGGG
CTAAGAGCGG GGTATAATAG TCTGAGTACA CAGTTTTTAC TGAGTCCAAG GCTTTTGCTG
GCCTACCGTC CCGTGAACAA CAGAAAAATC TTTCGTTTTA GTGCAGGGGT TTATCAGCAG
GCGCCCGACT ACAGGAGTAT ACGCGACTTT AATGGTATGC TGAACTTACA TCAGAAGGCA
CAGCGCTCGT ACAATACTTC GGCAGGTCTG GACTATGCAT TTGATGCCCT GGGTACACGC
TTAAAGTTCA GTTCTGAGCT CTATTTTAAA TATCTGGACA GGCTGGTACC TTATATGATG
GACAACGTAC GGGTGAAATA CCTGGCCGGA GAAGTGGCAA CCGGCTATAC TTATGGAGCT
GATTTTAACA TTGGTGGTGA GTTTGTAAAG GACCTGCTGT CGTATTTCAG GATTTCTTTT
ATGAAGTCGG CCCAGGACCT GAAAAACGAT GGGCTGGGTT ACCTGAAACG ACCCGCGGAT
CAGCGTGTAA ACTTTTCTGC ATACTTTCAG GACAGGCTGT TGAACAGTCC GGCCTACAAA
GTACACCTCA CTTTGCTTTA TGGCGCTAAA CTGCCCGTGG GTTCGCCACT GCTGCAGAGG
TATTCTGACG ATTTTCACAT CCCGGCCTAT AAGCGGGTGG ATATTGGTTT CTCTAAAGAT
TTTTTAGATG ATTTTAATGT AAAAAAATCA GGTTTTTTAG AGAAATATTT TAGTTCGTTT
ACAGCCAGCG TTGAAGTATT TAATTTGTTG AATATCAATA ATACAGTTTC TTATTTATGG
TTGAAAGATC TGGATAACGT ACAATATGCT GTGCCTAACT ACTTAACCGG CAGGCGGCTT
AATGTGAAAT TGGTGATCAA GTTTAAAAAA TCGAAATGA
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| Protein sequence | MLRTCLLVFV VLLGFGKAVA QPLIKISGLV TDELGKSLQQ VTVTVIGQSQ STITDEQGAY
NIYSKSKIFT LKYTLLGYNT ILVSIKQDKA GRVTQHVVMR INPNELEQVT ITNKQNQLSN
STLINLTDAA AMPSVSGNFE AVLKTLPGVS PNNELSAQYS VRGGSFDENL VYVNDVEISR
PVLVRNAQQE GLSFINTDLL SSAKFSAGGF EARYGDKLSS VLDVKYDRPD SSSAAVSAGL
LGLAFSSKIV SPNSYLLTGI RYKNNTGILN SQDNKGVYTP SFTDVQLLYN YNLSSRFSLS
LLGNYNSGRF KLIPESRETE FGTADTKLRL NVDYEGEEKD NYQSAGAAIT LKFTPRPDYV
IKWISSYFKT DEKEHIDIAG WYLFDKDDGP STSKESSIGG YINYAMNKLT SQNFSTELKA
DQTFKNHTFS WGLRFENKDY NDDLNEYSLI DSAGYIANQQ VHNFYQNNSV VVKNKLTIQY
YTAYMQDSYR LSANTDLQLG LRAGYNSLST QFLLSPRLLL AYRPVNNRKI FRFSAGVYQQ
APDYRSIRDF NGMLNLHQKA QRSYNTSAGL DYAFDALGTR LKFSSELYFK YLDRLVPYMM
DNVRVKYLAG EVATGYTYGA DFNIGGEFVK DLLSYFRISF MKSAQDLKND GLGYLKRPAD
QRVNFSAYFQ DRLLNSPAYK VHLTLLYGAK LPVGSPLLQR YSDDFHIPAY KRVDIGFSKD
FLDDFNVKKS GFLEKYFSSF TASVEVFNLL NINNTVSYLW LKDLDNVQYA VPNYLTGRRL
NVKLVIKFKK SK
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