| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1847 |
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| Symbol | ddl |
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| ID | 8252951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2137723 |
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| End bp | 2138709 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644935498 |
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| Product | D-alanyl-alanine synthetase A |
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| Protein accession | YP_003092117 |
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| Protein GI | 255531745 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00879872 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0251209 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGAAAA AAATAGCATT ACTAACTGGT GGTACTACCG GCGAATGGGT AGTTTCGGTT
AAAAGCGCTG CCACTATCGC TCAGAACCTG GATGCCGACA AATTTGATGT ATATAAGATT
ATGCTTACCC AGCAGGGCTG GTTCTATGAG CCTGCCGATT CTGTAAAAAT TGAGGTAGAC
CGTAACGATT TCTCTATTAA CCTGAAAGGA AAAAAAGTAA AGTTTGAGGG GGTGTTTATT
GCCATACACG GATCGCCGGG CGAAGACGGT AAACTGCAGG GCTATTTTGA CATGTTGGGT
ATACCTTATA CTACCTGCGA TGCACTGACG TCGGCGGTTA CCATGAATAA GGGCTATACA
AAGGCCATTG TTGATGGTAT AGCGGAGTTG AATATTGCGA AATCGGCACA AATCTTTAAA
GGTACCCCTT ATAGCCTGGA ACAGATAAAA AAAACGCTTA AAGTACCGTA TTTTGTTAAA
CCCAACAACG GCGGAAGCAG CATAGGTATG AGCAAGGTAA ACCATCCTGA TGATTTGCAG
GCCGCAATAG ACCGTGCCTT TAAAGAAGAT AGTCAGATTT TGATTGAAGA GTTTATTTCG
GGAAGGGAGT TTACCATTGG CGTAGTAAAG CTGGACGGTG AAATTACCGT TTTACCGGCT
ACAGAAGTAG AAACAGCCAA AGAGTTTTTT GATTTTGAAG CCAAATATAC ACCAGGAGTA
GCTACCGAAA CTACACCGGC ACCTATCAGA AAAGAAACAT TGGAGAGGGT AACACAGATT
GTTAAAAACG TATATCTGAA ACTGAACTGC AGGGGGGTAG TGCGGATAGA TTTTATCCTT
AACGGAGATG AAGGCGATTT TTACTTCATT GAGATCAATA CCATACCTGG CCAAACGGCT
ACCAGCTTTA TTCCGCAACA GGTTGCTGCT GCCGGCATGA AACTGAACGA TTTTTATACC
AAACTGATCA GAGAAACGAT AGGCTGA
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| Protein sequence | MKKKIALLTG GTTGEWVVSV KSAATIAQNL DADKFDVYKI MLTQQGWFYE PADSVKIEVD
RNDFSINLKG KKVKFEGVFI AIHGSPGEDG KLQGYFDMLG IPYTTCDALT SAVTMNKGYT
KAIVDGIAEL NIAKSAQIFK GTPYSLEQIK KTLKVPYFVK PNNGGSSIGM SKVNHPDDLQ
AAIDRAFKED SQILIEEFIS GREFTIGVVK LDGEITVLPA TEVETAKEFF DFEAKYTPGV
ATETTPAPIR KETLERVTQI VKNVYLKLNC RGVVRIDFIL NGDEGDFYFI EINTIPGQTA
TSFIPQQVAA AGMKLNDFYT KLIRETIG
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