| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1772 |
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| Symbol | |
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| ID | 8252875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 2071768 |
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| End bp | 2072649 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 644935423 |
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| Product | helix-turn-helix- domain containing protein AraC type |
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| Protein accession | YP_003092043 |
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| Protein GI | 255531671 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0120296 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCAAG GAAAAAATGC CGATGACTTT TTTAAGGTTC AGTTAGTTGG CTTCAGGAAG
CAAATCCGAC TTGATGGTGG TTCGTGTATA ATAGAGGTTG ACAAAACGAT TGCAGAAGTC
GAGTATACCG ATCTAATCAT CGTGCCGGCA ATTTGGGGTG ATGTGATGAG GGGAACACAA
TTGAACAGGC ATTATTTTTC CTGGCTTATT AATCAGTATA AAAACGGAGC TGAAATTGCA
AGTTACTGTG TCGGAGCTTT TATAGTTGCC GCAACCGGAT TGTTAAATGG AAAACGTTGT
GCCACGCACT GGGCATATAC AAACGAGTTG CTAGCCTATT ATCCCGAAAT CAAGCTCGTT
CCGGAGAAAA TAATAACGGA GCAAAACGGC ATTTATTCAA GTGGCGGAGG GACATCTTAT
TGGAACTTGT TATTATATCT CCTGGAAAAG TTTACGTCAA GAAAAGTAGT CATTGCCGCG
ACTAAATATT TCTTACTGGA TCTCGCCAGA AACAGCCAAT CTGAATTTGT GATGTTTAAG
GGACAGAAAG AACATGGCGA TAAATTGGTA GAAAAGGTGC AATTGTATAT TGAGAATAAT
TATCAGGAGA AAATTAATAT TGAACGTTTG GCGACTGATT TTTCTGTGGT CAGAAGAACG
CTAGAAAGGC GGTTCAGCAA GGCAACAAAA AACACCATTG CGGAATATAT ACAACGGACA
AAAATAGAGG TAGCAAAGAA AGAGATCGAG AAGGACAGAA AAACAATCAA TGAAATAATG
TATGAACTCG ATTATGCGGA TAAGAAAGCT TTTAAAGATT TGTTTCTTAA AATAACTGGC
TTGACGCCAA TAGAATATAA AAGGAAATAC GTCAGAAATT GA
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| Protein sequence | MQQGKNADDF FKVQLVGFRK QIRLDGGSCI IEVDKTIAEV EYTDLIIVPA IWGDVMRGTQ
LNRHYFSWLI NQYKNGAEIA SYCVGAFIVA ATGLLNGKRC ATHWAYTNEL LAYYPEIKLV
PEKIITEQNG IYSSGGGTSY WNLLLYLLEK FTSRKVVIAA TKYFLLDLAR NSQSEFVMFK
GQKEHGDKLV EKVQLYIENN YQEKINIERL ATDFSVVRRT LERRFSKATK NTIAEYIQRT
KIEVAKKEIE KDRKTINEIM YELDYADKKA FKDLFLKITG LTPIEYKRKY VRN
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