| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1532 |
|---|
| Symbol | |
|---|
| ID | 8252634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 1819632 |
|---|
| End bp | 1821104 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644935186 |
|---|
| Product | RNA polymerase sigma-54 factor, RpoN |
|---|
| Protein accession | YP_003091807 |
|---|
| Protein GI | 255531435 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.89955 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAAAC AACACCTTCA ACAAAAATTA CTTCAAAAAT TATCACCACA GCAAATTCAG
TTTATTAAAC TGCTGCAAGT ACCAACCGTT GCATTAGATA CCCGCATAAA AGAAGAACTG
GAAGAAAACC CGGCACTGGA AGATCCGAGT TTAATGATTG CCGAGGAGCC TAAAAGTGAA
TACGACGACC TGAACGATGC ACCTGATGAT TTTGATGGCG GTAACAAAGA AGAAAGCACA
GATGAGTTTA ATGTTGATGA TTATTTACAG GATGATGATG TAAATGATTA CAGCACGTCA
TATAATAACA ATGACGATGA TGAGGAAAAA AAGGAAACAC CTATAGCGAT TGAAAGTACT
TTTTTCGAAA GTTTACAGGA GCAGTTAGAC CTGGTCCCCC TTTCTGACCA GGACTTCATC
ATTGGTAAGC AGATCATAGG AAGCCTGGAT GACGACGGAT ATTTAAGAAG ACCCGTGACC
TCGATGATCG ATGACCTTGC TTTTTCTCAA AACGTAATGG TAGAAGAAGA AGATGTACTG
GAGATGTTAA AAGTGATCCA GCATTTTGAC CCGCCGGGCA TTGCTGCAAG GGATTTACAG
GAATGCCTGA CACTCCAATT AAAACGAAAA GATACCAATA ACCCAATAAT TCAGAAGGCA
ATTTTAATTG TTGAAAATTA CCTCGACGAG TTTACCAGGA AACACTACGA TAAACTCGAA
AAATCTTTGA ACCTGAACAG TGAGGACTTA AAAGAGATTA TTGCCGAGAT ACTGAGACTA
AATCCTAAAC CAGGAGATTC CAATCAGGTT ACTACCAAAC AATTACAGAT CATCCCTGAT
TTTCATGTTT CTAACAATGA TGGGGTATTG ATCCTTACGC TGAACTCGAA AAATGCACCT
GAACTACGGG TGAGCCGTTC TTATATCGAT ATGTTTGATC ATTACGATAA GGCCGCCCAG
AAAGATAAAA AATTAAAGGA AGCGGTACAG TTTGTGAAGC AAAAACTGGA TTCAGCAAAA
TGGTTTATTG ATGCCATTAA ACAAAGACAG CAGACCCTGC TTAAAACCAT GAACGCCATT
ATGCAGTATC AGTATGAGTA CCTGCTTACC GGTGATGAAC GCAAAATGCG ACCCATGATA
TTGAAGGATA TTGCCGATAA GATCGATATG GACATCTCCA CAGTTTCGCG CGTAGCCAAT
TCTAAATATG TACAAACCGA ATTTGGTACA TTCCTGTTAA AATCTTTTTT CTCGGAAGCC
ATCCAGACCG AAAGCGGCGA AGAGGTTTCC AATAAAGAAG TAAAGAAGAT ACTGGAAGAT
TGCATTGGAA ATGAAGATAA ACGCAAACCC CTGGCAGATG AAAAACTAAC TGAGATTCTG
AAAGAAAGAG GTTACAATAT TGCCAGACGA ACAGTAGCCA AATACAGGGA ACAAATGAAC
ATCCCTGTAG CCAGGTTAAG AAAAGAACTG TAA
|
|---|
| Protein sequence | MLKQHLQQKL LQKLSPQQIQ FIKLLQVPTV ALDTRIKEEL EENPALEDPS LMIAEEPKSE
YDDLNDAPDD FDGGNKEEST DEFNVDDYLQ DDDVNDYSTS YNNNDDDEEK KETPIAIEST
FFESLQEQLD LVPLSDQDFI IGKQIIGSLD DDGYLRRPVT SMIDDLAFSQ NVMVEEEDVL
EMLKVIQHFD PPGIAARDLQ ECLTLQLKRK DTNNPIIQKA ILIVENYLDE FTRKHYDKLE
KSLNLNSEDL KEIIAEILRL NPKPGDSNQV TTKQLQIIPD FHVSNNDGVL ILTLNSKNAP
ELRVSRSYID MFDHYDKAAQ KDKKLKEAVQ FVKQKLDSAK WFIDAIKQRQ QTLLKTMNAI
MQYQYEYLLT GDERKMRPMI LKDIADKIDM DISTVSRVAN SKYVQTEFGT FLLKSFFSEA
IQTESGEEVS NKEVKKILED CIGNEDKRKP LADEKLTEIL KERGYNIARR TVAKYREQMN
IPVARLRKEL
|
|---|
| |