| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1384 |
|---|
| Symbol | |
|---|
| ID | 8252484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1646644 |
|---|
| End bp | 1648161 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644935037 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003091660 |
|---|
| Protein GI | 255531288 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.116245 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.23383 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAA TAAAACTTAC TAACCTGTTG CTGATGTTTT TTGCACTTGC TACAATAGCG
CTAAGTTCAT GTAAAAAATC GTTGATGGAA AATGCTGAGG ATTTTGTTAC ACCCGATCAG
TTTTTCAAGA ACGAGAATCA ATGTATAGCT GCCTTAAATG GCTGCTATAT TCCTTTTAAC
GCTATTTTTA CATCTGGATT GATGTTGGCC AACGAGGGGG GCACCGACCT TGGATTTTTA
AATTCCTCTG CTATAGATCA GAGATTTGAA ATTTCACCAG CCAATCCTGG TATGGGCAGA
AATCTATGGA CCAATTGTTA TCAGGGGGTG ATGTATTGCA ATTCTGCGAT ACAGGGTATC
GAAAAATCAC CTGTCAGCGA TACGCGTAAA CAGGCTTTGA TTGCAGAAGG AGTAACACTC
AGGGCCATGT ACTATTATAT CCTTACCTCA ACCTTTGGCG ATGTACCTTA TTATACAGAT
GCAGTATCAT CGCTTGAAGT ATTGGATAAG GTAGCTAAAC TTGGAAGGAT GAGTGCTTTT
GAAACCCGTA AAACGATAAT TTCAGATCTT CAGAAATATG CACCCAGTCT CCCTGCCAAA
AGAACTTCTG ATGTACCCGG AAACCGGATT TCCGGCCCCA TGGCCAATAT GCTGATCGCT
AAAATGGCCG TTTGGAATAA AGATTACGAA ACGGGCCTGG CAGCAGCTAA AGAAATCCAG
AAAATTTACG GACAGCTCTT ACAATACCCG CTAACAGATA CTTATTTCCG GAACAAGAAT
ACGCCGGAAT CTATTTTTGA GGTACAGTTT ACATGGTCGG TATCGGGGCT TAAAAAGACT
ACCAATATTG CTTGCTTTTT TACACCAAGT AAAACAGCTT CCCAGGCAGT TTATGATGGT
GTTACCATCC CGGAGTTGGG TGCTACAGCA AATCCCTATA CACCAGTAAC CCCTACAGAA
TATTTCATGT CCCTTTATGA CGTGTATGAT CCGCGTCGTG AAATTATCCT GGCTTATACT
TATAACGGCG TTTTTTTTAA AAGACCGATG AGTGCTAATG GGACCGGAAA GCCATGGATG
GGGCCTAAAT TCTGGTGCCC GGGTATGGAC AATGCTTCTG ATGGAAATAA CCAGAAGGTG
TTCAGGTATG CGGATGCTTT ATTACTGATG GCAGAATGTG CCAACGAAAC AGGAGACGCC
AACTTGGCTA TGTCAAGTAT AAACGAGGTG AAAGAACGGG CATCGGCCCT TTATAAGTTA
ACTGCCTATC CGGGCAAAGA AGCGTTTTTT GAGGAGTTAA AAAAAGAAAG GGCCAGAGAA
CTCATGGGCG AATATACCCG CAAGTGGGAT CTGGTGCGTT GGGGTACTTT TTACGAGGCC
GTAAAGGCCA CCTCGGCAAC AGAATTTTCT GTCATTAACG ATAATTTAAG GCCTTATCAT
GAATATTATC CAATCTCAGA TAGTGAGGTG TCAAGATCTG AAGGCAGATT GAGCAACCCG
AAGTATACAG GCAATTAG
|
|---|
| Protein sequence | MMKIKLTNLL LMFFALATIA LSSCKKSLME NAEDFVTPDQ FFKNENQCIA ALNGCYIPFN
AIFTSGLMLA NEGGTDLGFL NSSAIDQRFE ISPANPGMGR NLWTNCYQGV MYCNSAIQGI
EKSPVSDTRK QALIAEGVTL RAMYYYILTS TFGDVPYYTD AVSSLEVLDK VAKLGRMSAF
ETRKTIISDL QKYAPSLPAK RTSDVPGNRI SGPMANMLIA KMAVWNKDYE TGLAAAKEIQ
KIYGQLLQYP LTDTYFRNKN TPESIFEVQF TWSVSGLKKT TNIACFFTPS KTASQAVYDG
VTIPELGATA NPYTPVTPTE YFMSLYDVYD PRREIILAYT YNGVFFKRPM SANGTGKPWM
GPKFWCPGMD NASDGNNQKV FRYADALLLM AECANETGDA NLAMSSINEV KERASALYKL
TAYPGKEAFF EELKKERARE LMGEYTRKWD LVRWGTFYEA VKATSATEFS VINDNLRPYH
EYYPISDSEV SRSEGRLSNP KYTGN
|
|---|
| |