| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1259 |
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| Symbol | |
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| ID | 8252357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1486322 |
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| End bp | 1489642 |
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| Gene Length | 3321 bp |
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| Protein Length | 1106 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644934912 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003091537 |
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| Protein GI | 255531165 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.394544 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACTA TGAAAAAAAA ACTACTCAGT AAATGCCATT GGAGAACACA AACAGGTGCC
AGGTTACTGG TAGCGATGGC AATTTTACCA CTTGCCTCTT TTGCAGCAGA GAAATCTACA
TCGGCTAAAC CTAACGGTGC CGTTTTTTTT GTGCAACAAC AGATAACTGT CAAAGGGACG
GTTGTTGATA GTAAAGGTCT TCCTCTTGTT GGGGTAAGCA TCAAAGCTAA AAATGCAACT
GGAGCTGCCT TAACCAATAG TAATGGTGAA TTTACCATCA ACCTGCAAAA TCAAAACAGC
ATACTCGTAT TCAGTATGAT TGGTTTTAAA CCTGTGGAGG TTGTTGCATC GAACAACATG
AAGGTAGTAT TGGCAGATGA GGTATCAGAG CTGGACGATG TGGTGGTGAT CGGTTATGGT
ACTGTCAAAA AACGTGACCT TACGGGAGCC GTTGTTTCGG TAAAGCCTGA TCAAATTACT
GCCCGGCCGG GACCGAATCC TATGGAATCC TTACAGGGAA GGGTGGCCGG TCTGGACATT
ACACGTACAT CCGGGCAAGC CGGTGAAGGT GTGACCTTAC AGTTGCGTGG GAACAGATCT
ATTGGCGCCA ACTCTTTACC ATTATTTATC ATCAATGGTT TGCCAGGTGA CTACGCTACT
TTAAATCCTT ATGATATCGA ATCGATCGAT GTGTTAAAAG ATGCGGCATC AACGGCTACT
TACGGTGCCG CAGGAGCGAA TGGAGTAATT ATCATCACCA CAAAAAGTGG TAAAGCAGGA
AAGCTAAACA TCGATTTCAA CTCTTATTAT GGTTATAATG GCTGGTCGGT TGTTCCTGAT
GCTTTGAGTA AGGACCAATA TCTGGCTGCG AAAAGAGAGA TCTATAAATA TAACTTCGAT
GGTGCAACCA GGAAATGGGT GACTACTGCA GTTGCTGCGG CAAATGGATT TCCTGCAGCT
GCCCAACCGC TATGGCAATC GCCGGCAGAT GATGAAAAAG TTTTTGGACC GGAAAGATAT
AAGCTGTTCA ATGAAGGCAA TTTTGTGAAT TGGGCAGATA TTTTCATGAG GGACAAGCCG
GTTTTGCAAA ACTATAGTTT AGCTGCTTCT GGTGGTACCG ATGCTACAAA AGCTTATGTT
TCATTGAACA TGAATAATGA GAAAGGGCAG TATATTGGTG ACGATTACAA GTTGTATTCT
ACCAGCATGC GTCTGGACCA CAAGATCAGG AACTGGCTTT CTATAGGAGC TAACCTTCAG
GCCTCTTATG TAAATAGAGA CAAAGCCCAG GACAAACTGG AAAATGCAAT TGTTACCGAT
CCGTTGGTAC AGCCTTACAA AGCGGATGGA TCGATAAACC CTGACCTGGG TAGTAACGTA
TACAATCTTT TGCTTGACTA CCAGCCGGGC GTTTATGGAA ACGTAGACAA CAACACAAAA
GTGTTTTTTA ATCCTTACAT AGAAGTAAGA CCAATTAAGG GCTTATCTAT ATTAAGCCGT
GCCGGTGTGC GTATGGATTA TTCTAATACT TATCGTTTTG ATGGGGTGGG TTCTGTAAAT
TATACCTATG TAAATGCGAA TACGGCCAGG GCAAGGGTCA ATCAGAACCG TTATCAGGAA
TACCAGTGGG AAAACGTGCT GACGTATAAC TACCTGCTTG GAACCGATCA TGATTTTACC
TTTACCGGTG TTACTTCTTA CCTCCACAAA CAGTGGACAG AGACGGAAAT GAACCAGAGC
AACATTGCCA ATAACAATTT TAAATGGTAC AGGTTTAGCG GCGATGTGAA TACTACAGCC
ACATCCGCTT ACAGGATGCA AAAGACACTG GGTTTGTTAG GCCGTCTCAC TTACGCTTAT
AAAGGCAAGT ACCTTTTGTC GGCTTCAGTA CGCAGAGACG GGGCTTCGGT ATTGTATAAA
ACCAACCAAT GGGATACTTT CCCGGCAGTG TCTGCAGGCT GGAGGGTTTC TGATGAAAAG
TTTATGGAGG GTACGAAGAA ATACATCAAT AACCTGAAAG TTCGTGCTAC CTGGGGTGTT
GCAGGAACCG CCTTTATTCC ACCTAATTCT TCTGCTAATT TTGTTGAACA AACCAATATG
GCACTGGGTG GTGAGCTGGT TCCCATTTAC AGGAGTTCGC AATTTATTAC CAATCCAGAC
CTGAGCTGGG AGAAATCGAA AACCTTAAAC CTTGGTCTGG ATCTGGGTAT GTTTAACAAC
CGTATTGATA TGGCCCTGGA TTATTACAAT ACCAATACGG ATGGGGTAAT TTATAACGTC
AGTTCCCCAA TCCTTAACGG GGCGTACAGA TCTGGCAGTA CACCTTACCA AACCTATCTC
AATGTAGCGA AAACGAATAA CAAGGGTTTC GAAGTGAGCA TGAATACACG TAATATCGTG
AGCAAGAATT TTGAATGGAG CTCTTCTGTT GCTTTTGCCC GCAATAACGA GAAAATTTTA
AAATTAATAG GTGGGACAGC CAATAATATC ACCAATAACG TAGCGGCAGG AGAGAATCGT
ACACCTGGAA ATTACGTATT GAGCATCGGA GAACCAATTG CCTCATTTAG AAATTTCAAG
ATCGATGGCA TCTGGCAAAT AGGTGAGGAA ATAGATGCTG CTGCATTTGG AAGGCGCCCG
GGGGACATCA AAGTAAACAC TCCAGGTATT GTGAAACTGG CTGATGGTGT ATTTAAGAGA
GAGGGCACAG ACCTTTACTA TTATACCAAT CTGGCTGATG CGCAAAAATT TAATCCTGCC
TTAACTGCTG CAAGTTCTAC TTACCTCTAT AACAATACCA ATGACTATCA GACTATTGGA
CACAATACGC CAGATTTTAC ATTGGGTTTT CAAAACAGTT TCAAATACAA GAATTTTGAT
CTGGGTATTT ATTCTTTTGT GCGATGGGGA CAGACCATCA ATTATGTGAT GATGGGCTGG
TACAATCCAG GTTCACTGGC AACGGTTGCC AGTCCGCCAA GAACGATGCT TGCTAATTTT
AACTATTGGA CACCAGAAAA CCCGTCTAAT GATTTTCCGG TTATGAATAT CCAGACTGGT
ACCAGCATGT TGGGATTTTC GGGATTGAAT TATGTAGACG GTTCCTTCTT TAAGATCAAG
AACATCACAC TGGGTTATAC TTTACCACAA AATATAGCAA AAAAGGTGGC CATGCGTAGT
GTACGTTTTT ACAGCACCAT TACCAATCCA TTGGTGATTA CCAAAAGTCA CCTGTTAAAA
GATTACGATC CGGAAATGAA TGGGGAGATG GATTACCCAT TGACCAAGCA ACTGGTGTTC
GGTTTAAATG TGTCATTTTA A
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| Protein sequence | MKTMKKKLLS KCHWRTQTGA RLLVAMAILP LASFAAEKST SAKPNGAVFF VQQQITVKGT
VVDSKGLPLV GVSIKAKNAT GAALTNSNGE FTINLQNQNS ILVFSMIGFK PVEVVASNNM
KVVLADEVSE LDDVVVIGYG TVKKRDLTGA VVSVKPDQIT ARPGPNPMES LQGRVAGLDI
TRTSGQAGEG VTLQLRGNRS IGANSLPLFI INGLPGDYAT LNPYDIESID VLKDAASTAT
YGAAGANGVI IITTKSGKAG KLNIDFNSYY GYNGWSVVPD ALSKDQYLAA KREIYKYNFD
GATRKWVTTA VAAANGFPAA AQPLWQSPAD DEKVFGPERY KLFNEGNFVN WADIFMRDKP
VLQNYSLAAS GGTDATKAYV SLNMNNEKGQ YIGDDYKLYS TSMRLDHKIR NWLSIGANLQ
ASYVNRDKAQ DKLENAIVTD PLVQPYKADG SINPDLGSNV YNLLLDYQPG VYGNVDNNTK
VFFNPYIEVR PIKGLSILSR AGVRMDYSNT YRFDGVGSVN YTYVNANTAR ARVNQNRYQE
YQWENVLTYN YLLGTDHDFT FTGVTSYLHK QWTETEMNQS NIANNNFKWY RFSGDVNTTA
TSAYRMQKTL GLLGRLTYAY KGKYLLSASV RRDGASVLYK TNQWDTFPAV SAGWRVSDEK
FMEGTKKYIN NLKVRATWGV AGTAFIPPNS SANFVEQTNM ALGGELVPIY RSSQFITNPD
LSWEKSKTLN LGLDLGMFNN RIDMALDYYN TNTDGVIYNV SSPILNGAYR SGSTPYQTYL
NVAKTNNKGF EVSMNTRNIV SKNFEWSSSV AFARNNEKIL KLIGGTANNI TNNVAAGENR
TPGNYVLSIG EPIASFRNFK IDGIWQIGEE IDAAAFGRRP GDIKVNTPGI VKLADGVFKR
EGTDLYYYTN LADAQKFNPA LTAASSTYLY NNTNDYQTIG HNTPDFTLGF QNSFKYKNFD
LGIYSFVRWG QTINYVMMGW YNPGSLATVA SPPRTMLANF NYWTPENPSN DFPVMNIQTG
TSMLGFSGLN YVDGSFFKIK NITLGYTLPQ NIAKKVAMRS VRFYSTITNP LVITKSHLLK
DYDPEMNGEM DYPLTKQLVF GLNVSF
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