| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1172 |
|---|
| Symbol | |
|---|
| ID | 8252270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 1386726 |
|---|
| End bp | 1389743 |
|---|
| Gene Length | 3018 bp |
|---|
| Protein Length | 1005 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644934827 |
|---|
| Product | Tetratricopeptide domain protein |
|---|
| Protein accession | YP_003091452 |
|---|
| Protein GI | 255531080 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1729] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAA AATACCTTTT TATTCCGCTA CTGCTAGCAG GTGGCTTTAC AGCCGGTTAC
GCCCAGACAA GCGTACTGGT TAACCTGAAC AAGAATTACC AAACTGGTCT GGAACTACTG
GATAATGAAA AATATGTAGC AGCTGCGCAA CAGTTCAGAC TGGTTGAGCA GCTCAGGCAA
AAACCGGGCA CACAACAGGA AAGCAATGCC GAACTGTCTA TGCTTAAAGA AAATGCCAAA
TTCTATGCTG CCGTTTGTGC CCTTGAGCTC GGTAACAGTG ATGCGGAAAG CCTGTTTCAG
AACTTCATTA AAGATTATCC CCTTAACCCC AATACCAAAC TGGCTTACTT CCATGTAGGC
AAATCCTATT TTGCCCAAAA AAATTACCAG AAAGCACTGG AATGGTTTGA AAAAACCGAT
CCTTCTACGC TATCCGGCAA ACAGCGGCTG GAATATCAGT TTAAACAGGG CTATGCCTAC
TTCCAGCTCA GCAACATGGA AAAAGCTGAA CCTTTATTTG AAGCCGTAAA AAAAGAAAAA
TCACCTTTTC AGGAAAGTGC AACCTATTAC TTTGCCTACA TCAATTACCT GAACAAAGAA
TATAAAACGG CACTAAGCAA TTTTGAAAAG CTTAAAGGAT CGCCAACTTA CGAAGCCAGC
TATCCCTATT ACATCACCTC CATGTATTAC CTGGATGAAA GGTATGACGA TGTGATCAGC
TATGCCATAC CCATCTTAAA AACCTCTAAA CAACAATACG AAGCAGAAAT GCTGAGCCTG
ATTGCGGCAT CCTATTTTGC CAAATCTGAT TATGTAAATG CAGAAAAATA CTTCAGAGAG
TTTTATGCTA AAGACAAATC AAACAATAAG AATAACCTGT TTATTTACCA ATATGGCTAT
TCTTTATTTG AATTGAAAAA GTACAGCGAA TCTGTAACTG TACTTGAAAA ACTGGACAAC
GATGATGTGT ACCTTCAAAG CGGTATGTAC ACCCTGGGCC GCTCTTTTCT GCAGTTAAAA
AACAAGGAGA AAGCAAGAAG TGCTTTCTTC AGGGCATCCA GGCTTGATTT TGACAAGGTA
ATACAAGAAG AAGCCTGGAT CAATTATGCC AGACTGAGCT ATGAACTCGA GTTTAACCAG
CAGGCGCTGG AAGCAACTCA AAATTTCTTG AAACAGTTTC CTTCTTCACG TAAAATCAAT
GAAGCGAAAA CCCTGTTGGG CGAGATTTTG CTGACCAGCA AAAACTACCA GGCAGCAATA
GATATTCTGG AACCCATTCA GAGCAAATCG CCCGAAGCCA GGGAAGCTTA CCAGAAAGTA
ACCTATTTCA GGGGGCTGGA GTTTTACAAT GAACGCGCAT TTCCAAATGC CCTGTCTATG
TTCCTCCGCT CTGAAAAGTT TCCTGAAGAT AATGAAATTT TAGCGCTGAG TACTTACTGG
AAAGCCGAAG CCTGCTATGA ACTGAGAAAA TTTGGTGAAG CAGTAAGGCA TTTTGAAACC
TTTTTGGATA TGCCGGGTGC CAGCAAAACG GGTGTTTACA ATTTTGCCAA TTATGCCCTG
GCCTATTCAG CATTTGAAGA TGAAAAATAT GGAAAGGCGG CACTTTATTT TGAACGCTTT
TTAAAAGGTA ATGATAAAGA CCAGAAAACA GTAAATGATG CCACCATCAG GCTTGCCGAT
TCGTATTTTG TAAACAAAAG TTATGGTAAT GCCCTGGTAA ACTACAACAG GATCATCGAC
AGCAAAGCCA GCGGAGAAGA TTATGCATTG TTTCAACGTG GGATGATCCA GGGACTGGAT
AACCAGAATG ACGCCAAGAT CAATACCATG CAAAATTTGC TGAAACAGTT TCCCAACTCC
AATTATGCGG ATGATGCAGG TTTCGAGATG GCCTATACCT ATTTCAATAA GGGGGAACTC
GACAAATCAA AATCCGATCT GATCAGTCTG GTAAGCCAAT ACCCCAACAG CAGTTATGTA
CCACGTGCAT TGGTAACCAT AGGTCTGGTG CAATACAACC AGGACCAGGA TGATGCTGCC
CTTGAGTCTT TCAAAAAGGT GATCCGCGAT TACCCGAGTA CTGAAGAAGC CAAACAGGCC
CTGGAATCTA TCAAAAATAT CTATGTAGAC AAAGGCGATT CCCAGGGTTT CATCAATTAT
GCCGGCACAA CCCCACTTGG CAACTATTCA AACGCAGAAC AGGATAATAT CCTGTTCCAG
GGTGCCAACA ATCTTTATTT GAAAGGAGAT GCAAAGGGTG CTTTTGAAGC AATTAACGCT
TACTTTGACA AATTCCCTAA GGCAATCCAC GATAAAGAAG CCAAGTTCAT CAGAGCAGAA
TCACTGGTAA AATTAGGCCG CCCGAATGAA GCTGTTCCTG ATTATGAATA TATTCTGAAC
GACTGGACCA GTGATTATAC CGAACGCTCG CTGGTAAGCA TTTCCAAATT GTTCCTTGAT
CAGAAAAAAT ACAATGAGGC TATCGTTTAT CTGAAACGCC TGGAAACTAC GGCCGATTAC
AAAGTGCACT ATACATATGC ACTGAACAAT CTTCTAAAAG CTTACAGTGA GCTGAACATG
CCTGATGATG TGTTGAAATA TGTCCAGCTG GTCAAAGAAT CTGACAAAGC TTCTGAAGAA
GAAAAAAACA GCGTAGATCT ATATGCGGGT AAAGCTTATT TATTAAAAGG TGATACTGAA
CAAGCTATAA AAGCCTTTAA CAGTGTGATT AGCAAAACCA AAACCCTGGC TGCCGCAGAA
TCCAAGTACA ATCTGGCTGC CATACAGTAT GATAAAAAAG ACTATAAAAC CTCTACAAAA
ACCTGTTTTG ACCTCATCAA CAACATGCCT TCTTATGATT ACTGGGTAGC AAAGGCATTT
ATCCTGTTAT CCGATAACTA TGTGGCCCTG AAAGATAATT TACAGGCAAA AAGCACGCTC
CTGAGCATCA TCGACAATTA CGAAGGCAAG GATGACATTG TACCTACTGC CAAGGCCAAA
TTAGAAAAAA TTAAATAA
|
|---|
| Protein sequence | MSKKYLFIPL LLAGGFTAGY AQTSVLVNLN KNYQTGLELL DNEKYVAAAQ QFRLVEQLRQ
KPGTQQESNA ELSMLKENAK FYAAVCALEL GNSDAESLFQ NFIKDYPLNP NTKLAYFHVG
KSYFAQKNYQ KALEWFEKTD PSTLSGKQRL EYQFKQGYAY FQLSNMEKAE PLFEAVKKEK
SPFQESATYY FAYINYLNKE YKTALSNFEK LKGSPTYEAS YPYYITSMYY LDERYDDVIS
YAIPILKTSK QQYEAEMLSL IAASYFAKSD YVNAEKYFRE FYAKDKSNNK NNLFIYQYGY
SLFELKKYSE SVTVLEKLDN DDVYLQSGMY TLGRSFLQLK NKEKARSAFF RASRLDFDKV
IQEEAWINYA RLSYELEFNQ QALEATQNFL KQFPSSRKIN EAKTLLGEIL LTSKNYQAAI
DILEPIQSKS PEAREAYQKV TYFRGLEFYN ERAFPNALSM FLRSEKFPED NEILALSTYW
KAEACYELRK FGEAVRHFET FLDMPGASKT GVYNFANYAL AYSAFEDEKY GKAALYFERF
LKGNDKDQKT VNDATIRLAD SYFVNKSYGN ALVNYNRIID SKASGEDYAL FQRGMIQGLD
NQNDAKINTM QNLLKQFPNS NYADDAGFEM AYTYFNKGEL DKSKSDLISL VSQYPNSSYV
PRALVTIGLV QYNQDQDDAA LESFKKVIRD YPSTEEAKQA LESIKNIYVD KGDSQGFINY
AGTTPLGNYS NAEQDNILFQ GANNLYLKGD AKGAFEAINA YFDKFPKAIH DKEAKFIRAE
SLVKLGRPNE AVPDYEYILN DWTSDYTERS LVSISKLFLD QKKYNEAIVY LKRLETTADY
KVHYTYALNN LLKAYSELNM PDDVLKYVQL VKESDKASEE EKNSVDLYAG KAYLLKGDTE
QAIKAFNSVI SKTKTLAAAE SKYNLAAIQY DKKDYKTSTK TCFDLINNMP SYDYWVAKAF
ILLSDNYVAL KDNLQAKSTL LSIIDNYEGK DDIVPTAKAK LEKIK
|
|---|
| |