| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1154 |
|---|
| Symbol | |
|---|
| ID | 8252248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1354890 |
|---|
| End bp | 1356668 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644934805 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003091434 |
|---|
| Protein GI | 255531062 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0747551 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA TTGTCAATAT TATATATATC CTCACCGTAT TGATGGTGGT GAGTAGTTGC
AAAAGTGCTT TGGAGGCACC AACCAAATCA TCCTTAGATG AATCTGTTAT TTTTTCTACG
CCCAGCCTGG CTGAAGGGGC AGTAGCAGGT ATCTTTCATT CCTTTGGTGA AACCAATTCT
TATCGTGGCA GGTTCTTGGT CTATTATGGG ATCAACACAG ATGCTGAGGT TTACAATACC
TTAAAATCCG TAGATGATGA TAAAGCTAAA TTATCCAATT ACAATACCAA TGTAGCCAAT
GGTCAAATGA ATACGAGCGA CAATGCCTGG GCCAAATTTT ATGAGGCAAT TGAAAGGGCC
AACCTGGCCA TAAGGGGCCT AAGAGCTTAT GGAAAAGTAG AAAGCAATGC CCAGCTGGCA
CAAACATTAG GTGAAATTCT GACTTTAAGG GCTGTGATTT ACAATGACCT GATCAAGGGT
TGGGGAGATG TGCCGGCCCG TTTTGAACCC ATTACTACAG AAACAGCTTA CCTGCCAAGA
AACGATAGGG ATGTGATATA TAAACAGCTC CTTGCTGATC TGGATGAAGC CGCAAATTAT
CTGCCCTGGC CTAATGAAAA CGCTTTGACA AGTAAGGTAG AGCGGATCAG CAAAGCTTTT
GCAAAGGGGT TGAGAGCGCG TTTGGCATTA GCAGCCGGGG GCTACGCCCA GCATCTGGAC
GGTACGGTAC ATTTAAGTAC AGATCCTGAC CTGGCCCGCG ACAAAATGTA TGCTATCGCA
AAAAAGGAAT GTCTCGATAT CATTGGCAGT GGTAAATTAA AACTGCTTGG CTTTGAAGAA
GTCTTTAGAA AATTAAATGA AGAAGGAGGT GCTGCCGGTT TGGAATCGAT GTGGGAAATT
CCATTTAGTG AAGGTAGGGG AAGGGTAATT TTTGATCTGG GTGTCAGACA TACTACTATT
GATAAGTATA CCGGACAAAA CAAAGGCGGT ACCAATGGTC CAAACCCGAT TATGTTGTAT
GAGTATGATG TAGACGATGT AAGGAGGGAC GTTACCGTAG TTCCATATGA ATGGACAAAT
GGAATACAGG TGCCTTCTGC ACTTGGGCGT TTGTATTTTG GAAAATACCG TTACGAATGG
ATGAAAAGGA AAGTTACCTC TACCAATGAT GATGGGTTAA ACTGGATGTA TATGCGTTAT
TCAGATATAT TGTTAATGGC AGCTGAGGCC ATTAATGAAC TGGATGGACC GGCTGCTGCT
GCACCATATT TAAAACAGGT GCGCGACAGG GCCTTCCCAA CCAATCCTGC AAAAGTTACC
GCCTTTATGG CTGCGGCGAC AGCTTCTAAA CCTACATTTT TTGATGCTAT TGTGAATGAA
AGGGCATTGG AATTTACTGG AGAAATGCTT AGAAAGGCCG ATTTGATCCG ATGGAATTTA
TTAAATACCA AACTGACAGA AGCAAAGGAT AAATTAAGAC AACTAGAGAA CAGGCAAGGT
AAATATGCTA ATCTGCCAGC TAAAATCTAT TATAGAACCG CTGCTGATGG GGAGACGGTA
CAGATTTATG GTTTAAAATT TGGCGATACA GATGCGGCAG GTGCTGCTTT GGGTTATACT
TCAAATAAAA CATGGACTAT GGTTTCATCC GGTGATACCA AAACTTTCTG GGATGCCCTT
TTTGTAAAAG ATCCAAATGC ACAGCAGGTA TGGCCAATAT GGCAGGTGTT TTTAGATTCC
TCTAACGGAT TGTTAAATAA TGCTAATCTG GGACTATAA
|
|---|
| Protein sequence | MKKIVNIIYI LTVLMVVSSC KSALEAPTKS SLDESVIFST PSLAEGAVAG IFHSFGETNS
YRGRFLVYYG INTDAEVYNT LKSVDDDKAK LSNYNTNVAN GQMNTSDNAW AKFYEAIERA
NLAIRGLRAY GKVESNAQLA QTLGEILTLR AVIYNDLIKG WGDVPARFEP ITTETAYLPR
NDRDVIYKQL LADLDEAANY LPWPNENALT SKVERISKAF AKGLRARLAL AAGGYAQHLD
GTVHLSTDPD LARDKMYAIA KKECLDIIGS GKLKLLGFEE VFRKLNEEGG AAGLESMWEI
PFSEGRGRVI FDLGVRHTTI DKYTGQNKGG TNGPNPIMLY EYDVDDVRRD VTVVPYEWTN
GIQVPSALGR LYFGKYRYEW MKRKVTSTND DGLNWMYMRY SDILLMAAEA INELDGPAAA
APYLKQVRDR AFPTNPAKVT AFMAAATASK PTFFDAIVNE RALEFTGEML RKADLIRWNL
LNTKLTEAKD KLRQLENRQG KYANLPAKIY YRTAADGETV QIYGLKFGDT DAAGAALGYT
SNKTWTMVSS GDTKTFWDAL FVKDPNAQQV WPIWQVFLDS SNGLLNNANL GL
|
|---|
| |